From f6226672eaa6bd4de8d9c792138ea9d5713c4842 Mon Sep 17 00:00:00 2001
From: "Clelia (Astra) Bertelli" <clelia@runllama.ai>
Date: Mon, 15 Jun 2026 12:10:55 +0200
Subject: [PATCH 1/2] hotfix: canonicalize paths before applying filter in
 search tool

---
 Cargo.lock                   | 2 +-
 microagents-cli/Cargo.toml   | 2 +-
 microagents-cli/src/tools.rs | 7 ++++++-
 search-evals/Cargo.toml      | 2 +-
 4 files changed, 9 insertions(+), 4 deletions(-)

diff --git a/Cargo.lock b/Cargo.lock
index 6e63750..1a87933 100644
--- a/Cargo.lock
+++ b/Cargo.lock
@@ -3768,7 +3768,7 @@ dependencies = [
 
 [[package]]
 name = "microagents-cli"
-version = "0.3.0"
+version = "0.3.1"
 dependencies = [
  "astchunk",
  "async-trait",
diff --git a/microagents-cli/Cargo.toml b/microagents-cli/Cargo.toml
index 2e98e63..3ae8151 100644
--- a/microagents-cli/Cargo.toml
+++ b/microagents-cli/Cargo.toml
@@ -1,6 +1,6 @@
 [package]
 name = "microagents-cli"
-version = "0.3.0"
+version = "0.3.1"
 edition = "2024"
 license = "MIT"
 readme = "README.md"
diff --git a/microagents-cli/src/tools.rs b/microagents-cli/src/tools.rs
index 32d3b51..b1b3f7d 100644
--- a/microagents-cli/src/tools.rs
+++ b/microagents-cli/src/tools.rs
@@ -174,7 +174,12 @@ impl ToolFunction<()> for SearchTool {
         };
         let document_paths: Option<Vec<String>> = input["document_paths"].as_array().map(|arr| {
             arr.iter()
-                .filter_map(|v| v.as_str().map(|s| s.to_string()))
+                .filter_map(|v| v.as_str())
+                .map(|s| {
+                    std::fs::canonicalize(s)
+                        .map(|p| p.to_string_lossy().to_string())
+                        .unwrap_or_else(|_| s.to_string())
+                })
                 .collect()
         });
         let limit = input["limit"].as_u64().map(|l| l as usize);
diff --git a/search-evals/Cargo.toml b/search-evals/Cargo.toml
index c93cb87..c04df4d 100644
--- a/search-evals/Cargo.toml
+++ b/search-evals/Cargo.toml
@@ -4,7 +4,7 @@ version = "0.1.0"
 edition = "2024"
 
 [dependencies]
-microagents-cli = { path = "../microagents-cli", version = "0.3.0" }
+microagents-cli = { path = "../microagents-cli", version = "0.3.1" }
 serde = { version =  "1.0.228", features = ["derive"] }
 serde_json = "1.0.150"
 anyhow = "1"

From 0ca105031ca2bee4a349b910e6046fcb730d3f75 Mon Sep 17 00:00:00 2001
From: "Clelia (Astra) Bertelli" <133636879+AstraBert@users.noreply.github.com>
Date: Mon, 15 Jun 2026 12:17:14 +0200
Subject: [PATCH 2/2] fix: normalize paths to use forward slashes as we do in
 init_env

Co-authored-by: coderabbitai[bot] <136622811+coderabbitai[bot]@users.noreply.github.com>
---
 microagents-cli/src/tools.rs | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/microagents-cli/src/tools.rs b/microagents-cli/src/tools.rs
index b1b3f7d..c7237eb 100644
--- a/microagents-cli/src/tools.rs
+++ b/microagents-cli/src/tools.rs
@@ -177,7 +177,7 @@ impl ToolFunction<()> for SearchTool {
                 .filter_map(|v| v.as_str())
                 .map(|s| {
                     std::fs::canonicalize(s)
-                        .map(|p| p.to_string_lossy().to_string())
+                        .map(|p| p.to_string_lossy().replace('\\', "/").to_string())
                         .unwrap_or_else(|_| s.to_string())
                 })
                 .collect()