Skip to content

Error in "cn_make_grn" #12

Description

@rajinder4489

I'm trying to make cn_Proc with my own data which has 1 cell type and all have the same description.
At the step to construct C/T-specific GRNs, it is throwing an error.

The command that I'm using
grnProp<-cn_make_grn(stQuery, expList, species='Hs', tfs=hsTFs)

The output I get
`healthy_liver : 24
Number of samples per CT: 24

Error in expDat[, rownames(stGRN)] : incorrect number of dimensions
In addition: Warning message:
In if (is.na(tfs)) { :
the condition has length > 1 and only the first element will be used`

Activity

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions