From e0b7cadf1e59f72cd957864acd9aaa04214a9912 Mon Sep 17 00:00:00 2001 From: Changwan Seo Date: Wed, 24 Dec 2025 16:59:38 +0900 Subject: [PATCH 1/2] Revise citation format in README.md Updated citation format for FunVIP publication in README. --- README.md | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/README.md b/README.md index f73be15..0f8dff9 100644 --- a/README.md +++ b/README.md @@ -1,13 +1,8 @@ # FunVIP [![DOI](https://zenodo.org/badge/588465720.svg)](https://zenodo.org/doi/10.5281/zenodo.10714946) - FunVIP is now published please cite: -#### Seo CW, Yoo S, Cho Y, Kim JS, Steinegger M, Lim YW. FunVIP: Fungal Validation and Identification Pipeline based on phylogenetic analysis. J. Microbiol. 2025;63(4):e2411017. [Link](https://jmicrobiol.or.kr/journal/view.php?doi=10.71150/jm.2411017) -

- - - +#### Seo CW, Yoo S, Cho Y, Kim JS, Steinegger M, Lim YW. FunVIP: Fungal Validation and Identification Pipeline based on phylogenetic analysis. J. Microbiol. 2025;63(4):e2411017. [Link](https://jmicrobiol.or.kr/journal/view.php?doi=10.71150/jm.2411017)

### **Fun**gal **V**alidation & **I**dentification **P**ipeline #### An automatic tree-based sequence identification and validation pipeline for fungal (or maybe other) species From ec1fc8ba69a295551f98d8e51293ea3b83ec74fb Mon Sep 17 00:00:00 2001 From: Changwan Seo Date: Fri, 11 Sep 2026 08:44:21 +0900 Subject: [PATCH 2/2] Update scheduling section in README Removed completed beta release part 2 from the schedule. --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 131b340..d906ce7 100644 --- a/README.md +++ b/README.md @@ -114,8 +114,8 @@ Outputs are written to `{outdir}/{runname}/`: ## Scheduling 1. ~~Beta release part 1 (2023 Feburary ~ As paper published, ver 0.3) Will be tested by our lab memebers to fix bugs and advance features~~ -2. Beta release part 2 (As paper published ~ When pipeline gets stabled, ver 0.4) -Will be tested by peer taxonomists +2. ~~Beta release part 2 (As paper published ~ When pipeline gets stabled, ver 0.4) +Will be tested by peer taxonomists~~ 3. Stable release (ver 1.0) ## Running the tests