From f7d23fb2dbb6831487209dbba1009923b7b230dc Mon Sep 17 00:00:00 2001 From: Clare72 Date: Tue, 28 Jul 2026 14:14:03 +0100 Subject: [PATCH 1/5] info on ROIs and sources --- content/en/docs/Data/EM/_index.md | 2 +- content/en/docs/Data/EM/neuropil-regions.md | 78 +++++++++++++++++++++ 2 files changed, 79 insertions(+), 1 deletion(-) create mode 100644 content/en/docs/Data/EM/neuropil-regions.md diff --git a/content/en/docs/Data/EM/_index.md b/content/en/docs/Data/EM/_index.md index de3f61c..25b6354 100644 --- a/content/en/docs/Data/EM/_index.md +++ b/content/en/docs/Data/EM/_index.md @@ -7,7 +7,7 @@ description: > --- -Virtual Fly Brain brings together data from multiple [electron microscopy (EM) resources](/docs/resources/), providing access to high-resolution neuroanatomical datasets. These datasets include complete EM volumes of Drosophila brains and ventral nerve cords, neuron reconstructions, connectivity information and neurotransmitter predictions. Data can be visualised using the web browser or accessed programmatically via [APIs](/docs/apis/). +Virtual Fly Brain brings together data from multiple [electron microscopy (EM) resources](/docs/resources/), providing access to high-resolution neuroanatomical datasets. These datasets include complete EM volumes of Drosophila brains and ventral nerve cords, neuron reconstructions, connectivity information and neurotransmitter predictions. Each connectome is also accompanied by a set of neuropil (and tract/nerve) regions of interest — see [Neuropil Regions](/docs/data/em/neuropil-regions/) for these region sets and their sources. Data can be visualised using the web browser or accessed programmatically via [APIs](/docs/apis/). ## Comparison Table of Integrated Datasets diff --git a/content/en/docs/Data/EM/neuropil-regions.md b/content/en/docs/Data/EM/neuropil-regions.md new file mode 100644 index 0000000..1d226a6 --- /dev/null +++ b/content/en/docs/Data/EM/neuropil-regions.md @@ -0,0 +1,78 @@ +--- +title: "Neuropil Regions from Connectome Datasets" +linkTitle: "Neuropil Regions" +categories: ["overview","help"] +tags: ["EM","Connectomics","DataSet","Neuropil","Synaptic_neuropil","ROI","Painted domain"] +weight: 3 +date: 2026-07-27 +description: > + Neuropil, tract and nerve regions of interest (ROIs) that accompany each EM connectome dataset on Virtual Fly Brain, and the sources they are derived from. +--- + +As well as neurons and connectivity, each EM connectome is accompanied by a set of +**regions of interest (ROIs)** — the neuropils (and, for the ventral nerve cord, tracts +and nerves) used by that project to spatially organise its data. VFB loads these ROIs as +image individuals, each an instance of the corresponding FBbt +([Drosophila anatomy ontology](https://www.ebi.ac.uk/ols4/ontologies/fbbt)) anatomy term, +aligned to the same standard [template](/docs/data/templates/) as the +dataset's neurons. This lets a connectome's own region names (e.g. `AL_R`, `LegNp(T1)(L)`, +`PB(L3)`) be resolved to ontology terms and browsed alongside its neurons. + +Each region individual records the source dataset's own region name (for example `AL_R`) +as an exact synonym, and is asserted to be `part_of` the relevant organism sex and body +side, so that left/right and male/female regions are distinguished. + +Separately, the dataset-specific *typed* synonyms — *name_in_hemibrain*, *name_in_banc* +and so on — are held on the FBbt anatomy **classes**, not on the individuals: each region +term is annotated with the name that each connectome uses for it, recording cross-dataset +nomenclature at the ontology level. + +## Summary of neuropil region sets + +| Dataset | VFB symbol | ROI content | Region source | Alignment template(s) | Reference | +|---------|-----------|-------------|---------------|-----------------------|-----------| +| Hemibrain | hb | ~230 painted domains: brain neuropils incl. individual antennal-lobe glomeruli, protocerebral-bridge glomeruli, mushroom-body lobe slices, fan-shaped-body layers and ellipsoid-body domains (adult female) | neuprint `hemibrain:v1.2.1` painted domains | [JRC_FlyEM_Hemibrain](/docs/data/templates/) | [Scheffer et al. (2020)](https://doi.org/10.7554/eLife.57443) | +| MANC | mv | 59 VNC neuropils, tracts and nerves (adult male) | neuprint `manc:v1.2.3` `roiInfo` | [JRC2018 Unisex VNC](/docs/data/templates/) | [Takemura et al. (2024)](https://doi.org/10.7554/eLife.97769.1) | +| male-CNS | mc | ~400 brain + VNC neuropils incl. antennal-lobe & protocerebral-bridge glomeruli, mushroom-body slices, fan-shaped-body layers, ellipsoid-body domains and optic-lobe layers (adult male) | neuprint `male-cns:v1.0` `roiInfo` | [JRC2018 Unisex](/docs/data/templates/) (brain) + [JRC2018 Unisex VNC](/docs/data/templates/) (VNC) | [Berg et al. (2025)](https://doi.org/10.1101/2025.10.09.680999) | +| Optic-lobe | ol | ~106 optic-lobe neuropils and their layers (ME, LO, LOP layers) (adult male) | neuprint `optic-lobe:v1.1` `roiInfo` | [JRC2018 Unisex](/docs/data/templates/) | [Nern et al. (2025)](https://doi.org/10.1038/s41586-025-08746-0) | +| FAFB (FlyWire) | fw | 78 lateralised brain neuropils (adult female) | FlyWire [Codex](https://codex.flywire.ai/) neuropil synapse table (materialization 783) | [JRC2018 Unisex](/docs/data/templates/) | [Dorkenwald et al. (2024)](https://doi.org/10.1038/s41586-024-07558-y); [Schlegel et al. (2024)](https://doi.org/10.1038/s41586-024-07686-5) | +| BANC | BANC | ~305 regions: brain neuropils (Ito) and antennal-lobe glomeruli (Schlegel) plus VNC neuropils, tracts and nerves (Court and MANC atlases), warped into BANC space (adult female) | BANC `region_outlines` meshes (`v888`) | [JRC2018 Unisex](/docs/data/templates/) (brain) + [JRC2018 Unisex VNC](/docs/data/templates/) (VNC) | [Bates et al. (2026)](https://doi.org/10.1038/s41586-026-10735-w) | + +Region names are mapped to FBbt terms during curation. Abbreviations that are ambiguous +between projects (for example `PB`, which can mean the protocerebral bridge or a +peripheral nerve) are resolved with an explicit lookup, and antennal-lobe glomeruli are +matched to their `antennal lobe glomerulus …` terms. + +## Sources + +- **neuprint** ([neuprint.janelia.org](https://neuprint.janelia.org)) — for the Janelia + datasets (Hemibrain, MANC, male-CNS, Optic-lobe) the region list is taken from the + dataset `Meta` node: the ROI names from `roiInfo` and their nesting from `roiHierarchy`. + Individual optic-lobe columns (thousands of ME/LO/LOP columns) are excluded, as they do + not correspond to FBbt terms. +- **FlyWire Codex** ([codex.flywire.ai](https://codex.flywire.ai/)) — for FAFB, the + lateralised neuropil names are taken from the column headers of the Codex neuropil + synapse table for the FlyWire full adult female brain. +- **BANC region outlines** — for BANC, the regions are neuroglancer meshes from the + project's `region_outlines` layer, in the public Google Cloud Storage bucket + `gs://lee-lab_brain-and-nerve-cord-fly-connectome/region_outlines/` (region names and + segment IDs in `segment_properties/info`; meshes under `meshes/`). They are + reference-atlas neuropils (Ito midbrain/optic-lobe, Court and MANC VNC, Schlegel + antennal-lobe glomeruli) warped into BANC space. Because more than one atlas is included, + a few VNC tracts appear in both the Court and MANC parcellations and are kept as distinct + regions. + +## Relationship to template painted domains + +These connectome ROIs are distinct from the standard neuropil **painted domains** of the +[reference templates](/docs/data/templates/). The template painted domains provide a +canonical, coarse-grained parcellation of a standard brain or VNC, whereas the connectome +region sets follow each project's own — often finer — subdivision (individual glomeruli, +mushroom-body slices, neuropil layers, and so on) and are aligned into the shared template +space so that they can be compared. + +## See also + +- [EM Data](/docs/data/em/) — the neuron and connectivity datasets these regions accompany +- [Templates](/docs/data/templates/) — reference templates and their painted domains +- [Dataset Versions and Deprecation](/docs/data/em/versioning/) — how region and neuron datasets change between releases From f92f13816719ef4906d16e358ddef2342853f9b8 Mon Sep 17 00:00:00 2001 From: Clare72 Date: Tue, 28 Jul 2026 15:26:38 +0100 Subject: [PATCH 2/5] add region connectivity info --- content/en/docs/Data/EM/_index.md | 2 +- content/en/docs/Data/EM/neuropil-regions.md | 5 +- .../en/docs/Data/EM/region-connectivity.md | 92 +++++++++++++++++++ content/en/docs/Data/EM/versioning.md | 3 +- 4 files changed, 98 insertions(+), 4 deletions(-) create mode 100644 content/en/docs/Data/EM/region-connectivity.md diff --git a/content/en/docs/Data/EM/_index.md b/content/en/docs/Data/EM/_index.md index 25b6354..8c87de3 100644 --- a/content/en/docs/Data/EM/_index.md +++ b/content/en/docs/Data/EM/_index.md @@ -7,7 +7,7 @@ description: > --- -Virtual Fly Brain brings together data from multiple [electron microscopy (EM) resources](/docs/resources/), providing access to high-resolution neuroanatomical datasets. These datasets include complete EM volumes of Drosophila brains and ventral nerve cords, neuron reconstructions, connectivity information and neurotransmitter predictions. Each connectome is also accompanied by a set of neuropil (and tract/nerve) regions of interest — see [Neuropil Regions](/docs/data/em/neuropil-regions/) for these region sets and their sources. Data can be visualised using the web browser or accessed programmatically via [APIs](/docs/apis/). +Virtual Fly Brain brings together data from multiple [electron microscopy (EM) resources](/docs/resources/), providing access to high-resolution neuroanatomical datasets. These datasets include complete EM volumes of Drosophila brains and ventral nerve cords, neuron reconstructions, connectivity information and neurotransmitter predictions. Each connectome is also accompanied by a set of neuropil (and tract/nerve) regions of interest — see [Neuropil Regions](/docs/data/em/neuropil-regions/) for these region sets and their sources, and [Region Connectivity](/docs/data/em/region-connectivity/) for each neuron's synapse tallies per region. Data can be visualised using the web browser or accessed programmatically via [APIs](/docs/apis/). ## Comparison Table of Integrated Datasets diff --git a/content/en/docs/Data/EM/neuropil-regions.md b/content/en/docs/Data/EM/neuropil-regions.md index 1d226a6..45108b0 100644 --- a/content/en/docs/Data/EM/neuropil-regions.md +++ b/content/en/docs/Data/EM/neuropil-regions.md @@ -32,9 +32,9 @@ nomenclature at the ontology level. | Dataset | VFB symbol | ROI content | Region source | Alignment template(s) | Reference | |---------|-----------|-------------|---------------|-----------------------|-----------| | Hemibrain | hb | ~230 painted domains: brain neuropils incl. individual antennal-lobe glomeruli, protocerebral-bridge glomeruli, mushroom-body lobe slices, fan-shaped-body layers and ellipsoid-body domains (adult female) | neuprint `hemibrain:v1.2.1` painted domains | [JRC_FlyEM_Hemibrain](/docs/data/templates/) | [Scheffer et al. (2020)](https://doi.org/10.7554/eLife.57443) | -| MANC | mv | 59 VNC neuropils, tracts and nerves (adult male) | neuprint `manc:v1.2.3` `roiInfo` | [JRC2018 Unisex VNC](/docs/data/templates/) | [Takemura et al. (2024)](https://doi.org/10.7554/eLife.97769.1) | +| MANC | mv | 59 VNC neuropils, tracts and nerves (adult male) | neuprint `manc:v1.2.1` `roiInfo` | [JRC2018 Unisex VNC](/docs/data/templates/) | [Takemura et al. (2024)](https://doi.org/10.7554/eLife.97769.1) | | male-CNS | mc | ~400 brain + VNC neuropils incl. antennal-lobe & protocerebral-bridge glomeruli, mushroom-body slices, fan-shaped-body layers, ellipsoid-body domains and optic-lobe layers (adult male) | neuprint `male-cns:v1.0` `roiInfo` | [JRC2018 Unisex](/docs/data/templates/) (brain) + [JRC2018 Unisex VNC](/docs/data/templates/) (VNC) | [Berg et al. (2025)](https://doi.org/10.1101/2025.10.09.680999) | -| Optic-lobe | ol | ~106 optic-lobe neuropils and their layers (ME, LO, LOP layers) (adult male) | neuprint `optic-lobe:v1.1` `roiInfo` | [JRC2018 Unisex](/docs/data/templates/) | [Nern et al. (2025)](https://doi.org/10.1038/s41586-025-08746-0) | +| Optic-lobe | ol | ~106 optic-lobe neuropils and their layers (ME, LO, LOP layers) (adult male) | neuprint `optic-lobe:v1.0.1` `roiInfo` | [JRC2018 Unisex](/docs/data/templates/) | [Nern et al. (2025)](https://doi.org/10.1038/s41586-025-08746-0) | | FAFB (FlyWire) | fw | 78 lateralised brain neuropils (adult female) | FlyWire [Codex](https://codex.flywire.ai/) neuropil synapse table (materialization 783) | [JRC2018 Unisex](/docs/data/templates/) | [Dorkenwald et al. (2024)](https://doi.org/10.1038/s41586-024-07558-y); [Schlegel et al. (2024)](https://doi.org/10.1038/s41586-024-07686-5) | | BANC | BANC | ~305 regions: brain neuropils (Ito) and antennal-lobe glomeruli (Schlegel) plus VNC neuropils, tracts and nerves (Court and MANC atlases), warped into BANC space (adult female) | BANC `region_outlines` meshes (`v888`) | [JRC2018 Unisex](/docs/data/templates/) (brain) + [JRC2018 Unisex VNC](/docs/data/templates/) (VNC) | [Bates et al. (2026)](https://doi.org/10.1038/s41586-026-10735-w) | @@ -74,5 +74,6 @@ space so that they can be compared. ## See also - [EM Data](/docs/data/em/) — the neuron and connectivity datasets these regions accompany +- [Region Connectivity](/docs/data/em/region-connectivity/) — per-neuron synapse tallies attached to these regions - [Templates](/docs/data/templates/) — reference templates and their painted domains - [Dataset Versions and Deprecation](/docs/data/em/versioning/) — how region and neuron datasets change between releases diff --git a/content/en/docs/Data/EM/region-connectivity.md b/content/en/docs/Data/EM/region-connectivity.md new file mode 100644 index 0000000..dea1b1d --- /dev/null +++ b/content/en/docs/Data/EM/region-connectivity.md @@ -0,0 +1,92 @@ +--- +title: "Regional Synaptic Connectivity from Connectome Datasets" +linkTitle: "Region Connectivity" +categories: ["overview","help"] +tags: ["EM","Connectomics","Connectivity","Neuropil","Synaptic_neuropil","ROI","DataSet"] +weight: 4 +date: 2026-07-28 +description: > + Per-neuron summaries of how many synapses each connectome neuron makes in each neuropil region, how they are represented on Virtual Fly Brain, and the sources they are derived from. +--- + +Alongside neuron-to-neuron [connectivity](/docs/data/em/versioning/) (`synapsed_to`), +each EM connectome carries **regional connectivity**: for every neuron, a summary of how +many synapses it makes in each [neuropil region](/docs/data/em/neuropil-regions/) — that +is, the neuron's input and output synapse tallies **per region**, rather than per partner +neuron. This lets a neuron be characterised by *where* in the brain or VNC its inputs and +outputs lie (for example "this cell has most of its postsynaptic sites in `AL_R` and its +outputs in `LH_R`"), and lets regions be compared by how much synaptic traffic they carry. + +## What is loaded + +For each neuron that VFB loads for a dataset — the cell-typed, non-deprecated neurons +cross-referenced to that dataset's [Site](/docs/data/em/versioning/) — VFB records the +neuron's synapse counts in each region as edges from the neuron to the corresponding +**region individual** (the same side-specific ROI individuals described in +[Neuropil Regions](/docs/data/em/neuropil-regions/)). Because each region individual is +side-specific (`part_of` a body side), left/right is carried by the target region and does +not need to be stored on the edge. + +Only regions that resolve to a loaded region individual are included. A dataset's +higher-level grouping ROIs (neuprint super-ROIs such as `SNP(R)` or `INP`), the +fine-grained optic-lobe columns, and FlyWire's unassigned bucket (`UNASGD`) are **not** +emitted as regional-connectivity edges, because their synapses are already counted at the +parent neuropil they belong to (counting both would double-count). + +## Representation + +Each neuron–region edge is one of two relations, carrying the counts as edge properties: + +| Relation | Direction | Counts | +|----------|-----------|--------| +| **has postsynaptic terminal in** (`RO:0002110`) | inputs the neuron receives in the region | `upstream` — number of the neuron's postsynaptic sites (inputs) in the region | +| **has presynaptic terminals in** (`RO:0002113`) | outputs the neuron makes in the region | `Tbars` — number of presynaptic release sites (T-bars); `downstream` — number of downstream synaptic connections | + +The counts are stored as numeric edge properties, matching the representation VFB already +uses for these regional tallies. A presynaptic edge is only asserted where the neuron +actually has output structure in the region (a T-bar count for the neuprint datasets, or an +output-synapse count for FlyWire), and likewise a postsynaptic edge requires an input count +— so an edge always means the neuron genuinely has terminals of that polarity in the region. + +## Datasets and sources + +| Dataset | VFB symbol | Count source | Regions | +|---------|-----------|--------------|---------| +| Hemibrain | hb | neuprint `hemibrain:v1.2.1` `roiInfo` | brain neuropils (incl. glomeruli, MB slices, FB layers, EB domains) | +| MANC | mv | neuprint `manc:v1.2.1` `roiInfo` | VNC neuropils, tracts and nerves | +| male-CNS | mc | neuprint `male-cns:v1.0` `roiInfo` | brain + VNC neuropils | +| Optic-lobe | ol | neuprint `optic-lobe:v1.0.1` `roiInfo` | optic-lobe neuropils and layers | +| FAFB (FlyWire) | fw | FlyWire [Codex](https://codex.flywire.ai/) neuropil synapse table (materialization 783) | lateralised brain neuropils | + +The neuprint dataset version is taken from the VFB **Site** node for each dataset (the +`dataset=` in its `link_base`), so the regional counts always come from the same release +VFB is pinned to — see [Dataset Versions and Deprecation](/docs/data/em/versioning/). + +### Sources + +- **neuprint** ([neuprint.janelia.org](https://neuprint.janelia.org)) — for the Janelia + datasets (Hemibrain, MANC, male-CNS, Optic-lobe), the per-region input/output tallies + come from each neuron's `roiInfo` (`upstream`, `pre`/T-bars and `downstream` per ROI). +- **FlyWire Codex** ([codex.flywire.ai](https://codex.flywire.ai/)) — for FAFB, the counts + come from the Codex per-neuron neuropil synapse table (input and output synapses per + neuropil). The file is the public Google Cloud Storage object + `https://storage.googleapis.com/flywire-data/codex/data/fafb/783/neuropil_synapse_table.csv.gz` + (materialization 783). FlyWire does not annotate T-bars, so its presynaptic edges carry + the output-synapse count as `downstream` (no `Tbars`); its postsynaptic edges carry the + input-synapse count as `upstream`. + +## Relationship to neuron-to-neuron connectivity + +Regional connectivity is a **per-region summary**, not a per-partner one: it says how many +synapses a neuron has in a region, but not which other neurons it connects to there. For +neuron-to-neuron connections (with partner identities and weights) see the `synapsed_to` +connectivity described under [Versions & Deprecation](/docs/data/em/versioning/). The two +are consistent — the regional tallies aggregate the same underlying synapses — and both are +refreshed together when a dataset version changes, following the same deprecation rules +(counts are only loaded for non-deprecated neurons). + +## See also + +- [Neuropil Regions](/docs/data/em/neuropil-regions/) — the region individuals these counts are attached to +- [EM Data](/docs/data/em/) — the neuron and connectivity datasets +- [Dataset Versions and Deprecation](/docs/data/em/versioning/) — how connectivity is versioned and deprecated diff --git a/content/en/docs/Data/EM/versioning.md b/content/en/docs/Data/EM/versioning.md index cdcc3de..ab38afa 100644 --- a/content/en/docs/Data/EM/versioning.md +++ b/content/en/docs/Data/EM/versioning.md @@ -26,7 +26,7 @@ A connectomic dataset is represented in VFB by several types of graph node and e | **Site (data source) nodes** | The external resource that hosts the data (e.g. Codex, NeuPrint, CATMAID). Holds the `link_base` used to build cross-reference links, and is flagged `is_data_source = [true]` when it is the canonical source for its neurons. | | **Neuron (Individual) nodes** | A single reconstructed neuron, cell typed by linking to anatomy ontology (FBbt) nodes via `INSTANCEOF` edges, with other annotations (soma location, developmental origin, sex, etc.) linked via other edge types. | | **Image / Channel nodes** | The Neuron's aligned image(s) and the channel(s) registered to a template. | -| **Connectivity edges** | Synaptic connectivity (`synapsed_to`) between Neurons. | +| **Connectivity edges** | Synaptic connectivity (`synapsed_to`) between Neurons, and [regional connectivity](/docs/data/em/region-connectivity/) — each Neuron's synapse tallies per neuropil region. | | **Cross-reference edges** (`database_cross_reference`) | Links a Neuron to a Site, carrying the `accession` (the Neuron's ID in that resource). | ## Core principle: Site and Neuron deprecation are independent @@ -94,5 +94,6 @@ independently. ## See also - [EM Data](/docs/data/em/) — the integrated connectomic datasets and their versions. +- [Region Connectivity](/docs/data/em/region-connectivity/) — per-neuron regional synapse tallies, versioned alongside neurons. - [Resources](/docs/resources/) — the external sites/resources that host the data. - [Term Info](/docs/website-features/terminfo/) — where cross-references and connectivity are shown. From 67fd76afc3e75fdae0bab90a7485ac28af4a02ec Mon Sep 17 00:00:00 2001 From: Clare72 Date: Tue, 4 Aug 2026 08:43:42 +0100 Subject: [PATCH 3/5] add L1EM --- content/en/docs/Data/templates.md | 1 + 1 file changed, 1 insertion(+) diff --git a/content/en/docs/Data/templates.md b/content/en/docs/Data/templates.md index 2cb5147..761fa7c 100644 --- a/content/en/docs/Data/templates.md +++ b/content/en/docs/Data/templates.md @@ -37,6 +37,7 @@ The files are available [here](https://github.com/VirtualFlyBrain/DrosAdultBRAIN | [adult brain template Ito2014](http://virtualflybrain.org/reports/VFB_00030786) | [nodulus](http://virtualflybrain.org/reports/VFB_00030789), [lobula](http://virtualflybrain.org/reports/VFB_00030788), [accessory medulla](http://virtualflybrain.org/reports/VFB_00030787), [lobula plate](http://virtualflybrain.org/reports/VFB_00030807), [inferior clamp](http://virtualflybrain.org/reports/VFB_00030797), [antennal mechanosensory and motor center](http://virtualflybrain.org/reports/VFB_00030796), [cantle](http://virtualflybrain.org/reports/VFB_00030795), [bulb](http://virtualflybrain.org/reports/VFB_00030790), [superior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030812), [superior intermediate protocerebrum](http://virtualflybrain.org/reports/VFB_00030813), [superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00030814), [inferior bridge](http://virtualflybrain.org/reports/VFB_00030799), [ellipsoid body](http://virtualflybrain.org/reports/VFB_00030808), [adult antennal lobe](http://virtualflybrain.org/reports/VFB_00030809), [medulla](http://virtualflybrain.org/reports/VFB_00030810), [fan-shaped body](http://virtualflybrain.org/reports/VFB_00030811), [lateral horn](http://virtualflybrain.org/reports/VFB_00030792), [lateral accessory lobe](http://virtualflybrain.org/reports/VFB_00030793), [vest](http://virtualflybrain.org/reports/VFB_00030798), [protocerebral bridge](http://virtualflybrain.org/reports/VFB_00030791), [saddle](http://virtualflybrain.org/reports/VFB_00030794), [wedge commissure](http://virtualflybrain.org/reports/VFB_00030865), [superior fiber system](http://virtualflybrain.org/reports/VFB_00030862), [superior posterior lateral protocerebrum commissure](http://virtualflybrain.org/reports/VFB_00030863), [superior antennal lobe commissure](http://virtualflybrain.org/reports/VFB_00030860), [superior ellipsoid commissure](http://virtualflybrain.org/reports/VFB_00030861), [labro_frontal_nerve - painted domain, BrainName pu](http://virtualflybrain.org/reports/VFB_00030830), [lateral cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030847), [lateral equatorial fascicle](http://virtualflybrain.org/reports/VFB_00030848), [lateral accessory lobe commissure](http://virtualflybrain.org/reports/VFB_00030845), [lateral antennal lobe tract](http://virtualflybrain.org/reports/VFB_00030846), [inferior antennal lobe commissure](http://virtualflybrain.org/reports/VFB_00030843), [inferior fiber system](http://virtualflybrain.org/reports/VFB_00030844), [pyriform fascicle](http://virtualflybrain.org/reports/VFB_00030858), [horizontal ventrolateral protocerebral fascicle](http://virtualflybrain.org/reports/VFB_00030842), [posterior lateral fascicle](http://virtualflybrain.org/reports/VFB_00030855), [superior AMMC commissure](http://virtualflybrain.org/reports/VFB_00030859), [mediolateral antennal lobe tract](http://virtualflybrain.org/reports/VFB_00030853), [posterior posteriolateral protocerebral commissure](http://virtualflybrain.org/reports/VFB_00030857), [medial equatorial fascicle](http://virtualflybrain.org/reports/VFB_00030851), [posterior cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030854), [vertical ventrolateral protocerebral fascicle](http://virtualflybrain.org/reports/VFB_00030864), [median bundle](http://virtualflybrain.org/reports/VFB_00030852), [wedge](http://virtualflybrain.org/reports/VFB_00030817), [gorget](http://virtualflybrain.org/reports/VFB_00030820), [anterior ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030815), [posterior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030818), [calyx of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030821), [horizontal ventrolateral protocerebral fascicle](http://virtualflybrain.org/reports/VFB_00030841), [anterior optic tubercle](http://virtualflybrain.org/reports/VFB_00030819), [superior posterior slope](http://virtualflybrain.org/reports/VFB_00030822), [anterior cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030836), [antenno-subesophageal tract](http://virtualflybrain.org/reports/VFB_00030835), [anterior superior lateral protocerebrum fascicle](http://virtualflybrain.org/reports/VFB_00030839), [anterior dorsal commissure](http://virtualflybrain.org/reports/VFB_00030837), [giant fiber neuron](http://virtualflybrain.org/reports/VFB_00030832), [medial cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030850), [prow](http://virtualflybrain.org/reports/VFB_00030834), [adult gnathal ganglion](http://virtualflybrain.org/reports/VFB_00030833), [vertical lobe of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030803), [pedunculus of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030802), [crepine](http://virtualflybrain.org/reports/VFB_00030801), [antler](http://virtualflybrain.org/reports/VFB_00030800), [superior clamp](http://virtualflybrain.org/reports/VFB_00030824), [mushroom body accessory calyx](http://virtualflybrain.org/reports/VFB_00030806), [flange](http://virtualflybrain.org/reports/VFB_00030805), [medial lobe of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030804), [posterior optic commissure](http://virtualflybrain.org/reports/VFB_00030828), [epaulette](http://virtualflybrain.org/reports/VFB_00030825), [medial antennal lobe tract](http://virtualflybrain.org/reports/VFB_00030826), [inferior posterior slope](http://virtualflybrain.org/reports/VFB_00030823), [posterior ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030816), [great commissure](http://virtualflybrain.org/reports/VFB_00030829), [adult maxillary nerve](http://virtualflybrain.org/reports/VFB_00030831), [anterior optic tract](http://virtualflybrain.org/reports/VFB_00030827) | |[adult VNS template - Court2018](http://virtualflybrain.org/reports/VFB_00100000)| [tectulum](http://virtualflybrain.org/reports/VFB_00101131), [prothoracic leg nerve](http://virtualflybrain.org/reports/VFB_00100016), [accessory prothoracic nerve](http://virtualflybrain.org/reports/VFB_00100015), [cervical connective](http://virtualflybrain.org/reports/VFB_00100004), [abdominal segment 3 nerve](http://virtualflybrain.org/reports/VFB_00100008), [abdominal segment 4 nerve](http://virtualflybrain.org/reports/VFB_00100007), [posterior dorsal mesothoracic nerve](http://virtualflybrain.org/reports/VFB_00100017), [accessory metathoracic nerve](http://virtualflybrain.org/reports/VFB_00100011), [adult accessory mesothoracic neuromere](http://virtualflybrain.org/reports/VFB_00100020), [metathoracic leg nerve](http://virtualflybrain.org/reports/VFB_00100010), [adult metathoracic neuromere](http://virtualflybrain.org/reports/VFB_00100001), [adult mesothoracic neuromere](http://virtualflybrain.org/reports/VFB_00100002), [dorsal prothoracic nerve](http://virtualflybrain.org/reports/VFB_00100014), [adult prothoracic neuromere](http://virtualflybrain.org/reports/VFB_00100003), [anterior dorsal mesothoracic nerve](http://virtualflybrain.org/reports/VFB_00100013), [abdominal nerve trunk](http://virtualflybrain.org/reports/VFB_00100006), [adult brain cell body rind](http://virtualflybrain.org/reports/VFB_00100021), [abdominal segment 2 nerve](http://virtualflybrain.org/reports/VFB_00100009), [ventral prothoracic nerve](http://virtualflybrain.org/reports/VFB_00100022), [adult abdominal neuromere](http://virtualflybrain.org/reports/VFB_00100005), [accessory mesothoracic nerve](http://virtualflybrain.org/reports/VFB_00100018), [dorsal metathoracic nerve](http://virtualflybrain.org/reports/VFB_00100019), [mesothoracic leg nerve](http://virtualflybrain.org/reports/VFB_00100012) | | [L3 CNS template - Wood2018](http://virtualflybrain.org/reports/VFB_00049000)| [right dorsomedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050415), [left central subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050398), [right centromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050434), [left ventromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050511), [right central neuropil of A9](http://virtualflybrain.org/reports/VFB_00050509), [right ventral neuropil of A9](http://virtualflybrain.org/reports/VFB_00050499), [right dorsomedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050423), [lower toe](http://virtualflybrain.org/reports/VFB_00050428), [right centromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050448), [right centromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050442), [right central neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050384), [left ventral neuropil of A9](http://virtualflybrain.org/reports/VFB_00050429), [right dorsomedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050426), [left ventromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050485), [ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00050397), [left ventromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050497), [left dorsomedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050372), [right central neuropil of T3](http://virtualflybrain.org/reports/VFB_00050387), [right central neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050382), [left central neuropil of A3](http://virtualflybrain.org/reports/VFB_00050407), [right T2 leg neuropil](http://virtualflybrain.org/reports/VFB_00050510), [right central neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050432), [right central neuropil of A3](http://virtualflybrain.org/reports/VFB_00050390), [right central subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050381), [left dorsomedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050374), [left central neuropil of T1](http://virtualflybrain.org/reports/VFB_00050402), [right central neuropil of A4](http://virtualflybrain.org/reports/VFB_00050391), [left central neuropil of A5](http://virtualflybrain.org/reports/VFB_00050409), [left dorsomedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050371), [right centromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050437), [right centromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050435), [right centromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050443), [right centromedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050439), [left central neuropil of A8](http://virtualflybrain.org/reports/VFB_00050412), [right dorsomedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050420), [right dorsomedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050416), [left dorsomedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050379), [right central neuropil of A6](http://virtualflybrain.org/reports/VFB_00050393), [right central neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050383), [protocerebral bridge - primordial](http://virtualflybrain.org/reports/VFB_00050396), [left central neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050399), [left dorsomedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050376), [left dorsolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050328), [left central neuropil of A4](http://virtualflybrain.org/reports/VFB_00050408), [left ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050357), [right central neuropil of A7](http://virtualflybrain.org/reports/VFB_00050394), [right central neuropil of A8](http://virtualflybrain.org/reports/VFB_00050395), [right central neuropil of A2](http://virtualflybrain.org/reports/VFB_00050389), [left dorsomedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050375), [left ventrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050361), [left ventrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050365), [left dorsomedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050377), [left central neuropil of T2](http://virtualflybrain.org/reports/VFB_00050403), [left central neuropil of A1](http://virtualflybrain.org/reports/VFB_00050405), [left central neuropil of T3](http://virtualflybrain.org/reports/VFB_00050404), [spur of mushroom body](http://virtualflybrain.org/reports/VFB_00050504), [left dorsomedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050378), [right T1 leg neuropil](http://virtualflybrain.org/reports/VFB_00050334), [left dorsomedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050368), [right dorsolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050336), [left dorsomedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050370), [left dorsomedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050369), [right dorsolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050340), [left central neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050401), [right dorsolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050337), [left T3 leg neuropil](http://virtualflybrain.org/reports/VFB_00050313), [crepine](http://virtualflybrain.org/reports/VFB_00050310), [right ventrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050307), [right ventrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050297), [right dorsolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050342), [left dorsolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050325), [left T1 leg neuropil](http://virtualflybrain.org/reports/VFB_00050330), [left dorsolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050315), [left ventrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050353), [left dorsolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050321), [right central neuropil of T1](http://virtualflybrain.org/reports/VFB_00050385), [posterior ventromedial cerebrum](http://virtualflybrain.org/reports/VFB_00050331), [left ventrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050352), [left dorsomedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050373), [left dorsomedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050380), [left ventrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050359), [left ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050355), [left centromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050480), [medial lobe of mushroom body](http://virtualflybrain.org/reports/VFB_00050501), [left ventromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050486), [right dorsal neuropil of A9](http://virtualflybrain.org/reports/VFB_00050350), [right dorsolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050348), [left ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050356), [left ventrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050351), [left dorsomedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050367), [posterior inferior protocerebrum](http://virtualflybrain.org/reports/VFB_00050312), [left ventrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050360), [left dorsolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050318), [left ventrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050363), [left ventrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050354), [left dorsolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050324), [right ventrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050296), [right ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050301), [left centrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050282), [left centrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050292), [left dorsolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050326), [left dorsolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050319), [left dorsolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050316), [right ventrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050304), [nodulus - primordial](http://virtualflybrain.org/reports/VFB_00050293), [left centrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050286), [right dorsolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050338), [right dorsolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050345), [right dorsolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050343), [right dorsolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050347), [right dorsolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050335), [left ventrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050358), [left ventrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050364), [left dorsomedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050366), [left ventrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050362), [left dorsolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050320), [right ventrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050308), [right ventrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050306), [right ventrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050305), [right ventrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050303), [posterior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00050329), [left dorsolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050317), [right centrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050262), [right centrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050269), [right centrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050266), [left T2 leg neuropil](http://virtualflybrain.org/reports/VFB_00050506), [left centrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050287), [left centrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050288), [right centrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050270), [fan-shaped body - primordial](http://virtualflybrain.org/reports/VFB_00050277), [right ventrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050298), [right ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050300), [left centrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050283), [left centrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050278), [left centrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050281), [left centrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050290), [right dorsolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050339), [right dorsolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050341), [right dorsolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050344), [left dorsal neuropil of A9](http://virtualflybrain.org/reports/VFB_00050349), [right dorsolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050346), [left dorsolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050327), [anterior ventromedial cerebrum](http://virtualflybrain.org/reports/VFB_00050332), [ventromedial cerebrum](http://virtualflybrain.org/reports/VFB_00050333), [left centrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050284), [posterior superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00050274), [right centrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050267), [left ventromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050494), [left centrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050289), [left dorsomedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050294), [left central neuropil of A9](http://virtualflybrain.org/reports/VFB_00050508), [superior intermediate protocerebrum](http://virtualflybrain.org/reports/VFB_00050257), [mushroom body](http://virtualflybrain.org/reports/VFB_00050505), [anterior superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00050275), [right centrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050263), [right centrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050268), [right centrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050271), [right centrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050265), [left central neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050498), [pedunculus of mushroom body](http://virtualflybrain.org/reports/VFB_00050500), [right centrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050261), [right centrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050273), [right centrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050272), [right centrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050264), [left centrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050291), [left dorsolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050323), [right ventrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050295), [vertical lobe of mushroom body](http://virtualflybrain.org/reports/VFB_00050503), [left centromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050481), [left ventromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050492), [left dorsolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050322), [lateral accessory lobe](http://virtualflybrain.org/reports/VFB_00050314), [right ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050299), [right ventrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050302), [right T3 leg neuropil](http://virtualflybrain.org/reports/VFB_00050311), [right ventrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050309), [right centromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050445), [calyx of mushroom body](http://virtualflybrain.org/reports/VFB_00050502), [left ventromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050483), [left ventromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050484), [left centromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050476), [left centromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050482), [left centromedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050472), [right centromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050466), [right ventromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050450), [antennal lobe](http://virtualflybrain.org/reports/VFB_00050465), [superior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00050464), [right ventromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050463), [right ventromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050461), [right ventromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050457), [left ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050487), [left ventromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050493), [left ventromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050495), [right ventromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050459), [right ventromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050460), [right ventromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050451), [right ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050455), [lateral appendix of mushroom body](http://virtualflybrain.org/reports/VFB_00050507), [left centrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050279), [left ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050489), [left ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050488), [right centrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050260), [left ventromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050490), [left centromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050479), [left centrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050285), [right dorsomedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050414), [right centromedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050440), [left central neuropil of A6](http://virtualflybrain.org/reports/VFB_00050410), [left central neuropil of A7](http://virtualflybrain.org/reports/VFB_00050411), [right dorsomedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050413), [left centromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050477), [right centromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050444), [right centromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050447), [left centromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050468), [left centromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050475), [right ventromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050449), [left centromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050478), [left centromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050469), [left centromedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050474), [clamp](http://virtualflybrain.org/reports/VFB_00050433), [right ventromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050452), [right centromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050436), [right ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050454), [right centromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050446), [right ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050453), [right ventromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050456), [left centromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050467), [right dorsomedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050421), [right dorsomedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050422), [right centromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050441), [left ventromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050491), [left ventromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050496), [right dorsomedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050258), [right ventromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050458), [right centrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050259), [left centrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050280), [superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00050276), [left centromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050471), [right ventromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050462), [left centromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050470), [left central neuropil of A2](http://virtualflybrain.org/reports/VFB_00050406), [left central neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050400), [right dorsomedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050417), [left centromedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050473), [right ventromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050431), [right central neuropil of T2](http://virtualflybrain.org/reports/VFB_00050386), [right central neuropil of A1](http://virtualflybrain.org/reports/VFB_00050388), [right central neuropil of A5](http://virtualflybrain.org/reports/VFB_00050392), [anterior optic tubercle primordial](http://virtualflybrain.org/reports/VFB_00050430), [right centromedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050438), [right dorsomedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050424), [right dorsomedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050425), [right dorsomedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050427), [right dorsomedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050419), [right dorsomedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050418) | +| [L1 larval CNS ssTEM - Cardona/Janelia](http://virtualflybrain.org/reports/VFB_00050000) | [Whole L1 CNS envelope](http://virtualflybrain.org/reports/VFB_001091yb), [Larval brain (left)](http://virtualflybrain.org/reports/VFB_001091yc), [Larval brain (right)](http://virtualflybrain.org/reports/VFB_001091yd), [Larval subesophageal zone (left)](http://virtualflybrain.org/reports/VFB_001091ye), [Larval subesophageal zone (right)](http://virtualflybrain.org/reports/VFB_001091yf), [Prothoracic neuromere T1 (left)](http://virtualflybrain.org/reports/VFB_001091yg), [Prothoracic neuromere T1 (right)](http://virtualflybrain.org/reports/VFB_001091yh), [Mesothoracic neuromere T2 (left)](http://virtualflybrain.org/reports/VFB_001091yi), [Mesothoracic neuromere T2 (right)](http://virtualflybrain.org/reports/VFB_001091yj), [Metathoracic neuromere T3 (left)](http://virtualflybrain.org/reports/VFB_001091yk), [Metathoracic neuromere T3 (right)](http://virtualflybrain.org/reports/VFB_001091yl), [Abdominal neuromere A1 (left)](http://virtualflybrain.org/reports/VFB_001091ym), [Abdominal neuromere A1 (right)](http://virtualflybrain.org/reports/VFB_001091yn), [Abdominal neuromere A2 (left)](http://virtualflybrain.org/reports/VFB_001091yo), [Abdominal neuromere A2 (right)](http://virtualflybrain.org/reports/VFB_001091yp), [Abdominal neuromere A3 (left)](http://virtualflybrain.org/reports/VFB_001091yq), [Abdominal neuromere A3 (right)](http://virtualflybrain.org/reports/VFB_001091yr), [Abdominal neuromere A4 (left)](http://virtualflybrain.org/reports/VFB_001091ys), [Abdominal neuromere A4 (right)](http://virtualflybrain.org/reports/VFB_001091yt), [Abdominal neuromere A5 (left)](http://virtualflybrain.org/reports/VFB_001091yu), [Abdominal neuromere A5 (right)](http://virtualflybrain.org/reports/VFB_001091yv), [Abdominal neuromere A6 (left)](http://virtualflybrain.org/reports/VFB_001091yw), [Abdominal neuromere A6 (right)](http://virtualflybrain.org/reports/VFB_001091yx), [Abdominal neuromere A7 (left)](http://virtualflybrain.org/reports/VFB_001091yy), [Abdominal neuromere A7 (right)](http://virtualflybrain.org/reports/VFB_001091yz), [Abdominal neuromere A8 (left)](http://virtualflybrain.org/reports/VFB_001091z0), [Abdominal neuromere A8 (right)](http://virtualflybrain.org/reports/VFB_001091z1) | | [JRC_FlyEM_Hemibrain](http://virtualflybrain.org/reports/VFB_00101384) | [PB(R3)](http://virtualflybrain.org/reports/VFB_00101491), [GOR(L)](http://virtualflybrain.org/reports/VFB_00101528), [BU(L)](http://virtualflybrain.org/reports/VFB_00101524), [LAL(L)](http://virtualflybrain.org/reports/VFB_00101526), [ATL(L)](http://virtualflybrain.org/reports/VFB_00101487), [GF(R)](http://virtualflybrain.org/reports/VFB_00101488), [PB(R1)](http://virtualflybrain.org/reports/VFB_00101489), [PB(R2)](http://virtualflybrain.org/reports/VFB_00101490), [VES(L)](http://virtualflybrain.org/reports/VFB_00101535), [NO1(R)](http://virtualflybrain.org/reports/VFB_00101543), [mALT(L)](http://virtualflybrain.org/reports/VFB_00101538), [CA(L)](http://virtualflybrain.org/reports/VFB_00101533), [PB(L6)](http://virtualflybrain.org/reports/VFB_00101503), [NO3(L)](http://virtualflybrain.org/reports/VFB_00101554), [PB(L8)](http://virtualflybrain.org/reports/VFB_00101505), [PB(L7)](http://virtualflybrain.org/reports/VFB_00101504), [SMP(L)](http://virtualflybrain.org/reports/VFB_00101507), [PB(L9)](http://virtualflybrain.org/reports/VFB_00101506), [gL(L)](http://virtualflybrain.org/reports/VFB_00101509), [SIP(L)](http://virtualflybrain.org/reports/VFB_00101508), [b\'L(L)](http://virtualflybrain.org/reports/VFB_00101511), [bL(L)](http://virtualflybrain.org/reports/VFB_00101510), [PB(R5)](http://virtualflybrain.org/reports/VFB_00101493), [CRE(L)](http://virtualflybrain.org/reports/VFB_00101512), [PB(R4)](http://virtualflybrain.org/reports/VFB_00101492), [PB(R7)](http://virtualflybrain.org/reports/VFB_00101495), [PB(R6)](http://virtualflybrain.org/reports/VFB_00101494), [PB(R8)](http://virtualflybrain.org/reports/VFB_00101496), [PB(L1)](http://virtualflybrain.org/reports/VFB_00101498), [PB(R9)](http://virtualflybrain.org/reports/VFB_00101497), [PB(L3)](http://virtualflybrain.org/reports/VFB_00101500), [PB(L2)](http://virtualflybrain.org/reports/VFB_00101499), [PB(L5)](http://virtualflybrain.org/reports/VFB_00101502), [PB(L4)](http://virtualflybrain.org/reports/VFB_00101501), [SCL(L)](http://virtualflybrain.org/reports/VFB_00101529), [SPS(L)](http://virtualflybrain.org/reports/VFB_00101532), [ICL(L)](http://virtualflybrain.org/reports/VFB_00101530), [RUB(L)](http://virtualflybrain.org/reports/VFB_00101515), [a\'L(L)](http://virtualflybrain.org/reports/VFB_00101514), [aL(L)](http://virtualflybrain.org/reports/VFB_00101513), [NO2(R)](http://virtualflybrain.org/reports/VFB_00101546), [NO3(R)](http://virtualflybrain.org/reports/VFB_00101548), [NO1(L)](http://virtualflybrain.org/reports/VFB_00101550), [NO2(L)](http://virtualflybrain.org/reports/VFB_00101553), [AL(L)](http://virtualflybrain.org/reports/VFB_00101484), [AOT(R)](http://virtualflybrain.org/reports/VFB_00101483), [GA(R)](http://virtualflybrain.org/reports/VFB_00101486), [POC](http://virtualflybrain.org/reports/VFB_00101485), [IPS(R)](http://virtualflybrain.org/reports/VFB_00101455), [SAD](http://virtualflybrain.org/reports/VFB_00101456), [GC](http://virtualflybrain.org/reports/VFB_00101478), [mALT(R)](http://virtualflybrain.org/reports/VFB_00101477), [AL(R)](http://virtualflybrain.org/reports/VFB_00101449), [VES(R)](http://virtualflybrain.org/reports/VFB_00101450), [SPS(R)](http://virtualflybrain.org/reports/VFB_00101454), [ATL(R)](http://virtualflybrain.org/reports/VFB_00101445), [IB](http://virtualflybrain.org/reports/VFB_00101443), [ICL(R)](http://virtualflybrain.org/reports/VFB_00101442), [GOR(R)](http://virtualflybrain.org/reports/VFB_00101453), [EPA(R)](http://virtualflybrain.org/reports/VFB_00101451), [CAN(R)](http://virtualflybrain.org/reports/VFB_00101459), [PRW](http://virtualflybrain.org/reports/VFB_00101460), [FLA(R)](http://virtualflybrain.org/reports/VFB_00101458), [GNG](http://virtualflybrain.org/reports/VFB_00101468), [CA(R)](http://virtualflybrain.org/reports/VFB_00101389), [LOP(R)](http://virtualflybrain.org/reports/VFB_00101388), [PED(R)](http://virtualflybrain.org/reports/VFB_00101390), [AMMC](http://virtualflybrain.org/reports/VFB_00101457), [b\'L(R)](http://virtualflybrain.org/reports/VFB_00101396), [LO(R)](http://virtualflybrain.org/reports/VFB_00101387), [ME(R)](http://virtualflybrain.org/reports/VFB_00101385), [AME(R)](http://virtualflybrain.org/reports/VFB_00101386), [a\'L(R)](http://virtualflybrain.org/reports/VFB_00101393), [aL(R)](http://virtualflybrain.org/reports/VFB_00101391), [bL(R)](http://virtualflybrain.org/reports/VFB_00101395), [RUB(R)](http://virtualflybrain.org/reports/VFB_00101440), [SCL(R)](http://virtualflybrain.org/reports/VFB_00101441), [SMP(R)](http://virtualflybrain.org/reports/VFB_00101437), [CRE(R)](http://virtualflybrain.org/reports/VFB_00101438), [ROB(R)](http://virtualflybrain.org/reports/VFB_00101439), [WED(R)](http://virtualflybrain.org/reports/VFB_00101419), [SLP(R)](http://virtualflybrain.org/reports/VFB_00101435), [LH(R)](http://virtualflybrain.org/reports/VFB_00101434), [SIP(R)](http://virtualflybrain.org/reports/VFB_00101436), [PVLP(R)](http://virtualflybrain.org/reports/VFB_00101416), [AVLP(R)](http://virtualflybrain.org/reports/VFB_00101408), [PLP(R)](http://virtualflybrain.org/reports/VFB_00101417), [AOTU(R)](http://virtualflybrain.org/reports/VFB_00101407), [PB](http://virtualflybrain.org/reports/VFB_00101401), [LAL(R)](http://virtualflybrain.org/reports/VFB_00101403), [FB](http://virtualflybrain.org/reports/VFB_00101398), [BU(R)](http://virtualflybrain.org/reports/VFB_00101402), [EB](http://virtualflybrain.org/reports/VFB_00101400), [gL(R)](http://virtualflybrain.org/reports/VFB_00101397), [AB(R)](http://virtualflybrain.org/reports/VFB_00101399), [AB(L)](http://virtualflybrain.org/reports/VFB_00102288), [EPA(L)](http://virtualflybrain.org/reports/VFB_00102287) | | [JRC2018Unisex](http://virtualflybrain.org/reports/VFB_00101567) | [ICL](http://virtualflybrain.org/reports/VFB_00102179), [ROB](http://virtualflybrain.org/reports/VFB_00102174), [GOR](http://virtualflybrain.org/reports/VFB_00102214), [SLP](http://virtualflybrain.org/reports/VFB_00102162), [RUB](http://virtualflybrain.org/reports/VFB_00102175), [CRE](http://virtualflybrain.org/reports/VFB_00102171), [SMP](http://virtualflybrain.org/reports/VFB_00102170), [SPS](http://virtualflybrain.org/reports/VFB_00102215), [CAN](http://virtualflybrain.org/reports/VFB_00102275), [SCL](http://virtualflybrain.org/reports/VFB_00102176), [SIP](http://virtualflybrain.org/reports/VFB_00102164), [IB](http://virtualflybrain.org/reports/VFB_00102185), [ATL](http://virtualflybrain.org/reports/VFB_00102190), [AL](http://virtualflybrain.org/reports/VFB_00102201), [EPA](http://virtualflybrain.org/reports/VFB_00102213), [VES](http://virtualflybrain.org/reports/VFB_00102212), [LH](http://virtualflybrain.org/reports/VFB_00102159), [LO](http://virtualflybrain.org/reports/VFB_00102109), [SAD](http://virtualflybrain.org/reports/VFB_00102271), [AME](http://virtualflybrain.org/reports/VFB_00102108), [PVLP](http://virtualflybrain.org/reports/VFB_00102148), [AVLP](http://virtualflybrain.org/reports/VFB_00102146), [WED](http://virtualflybrain.org/reports/VFB_00102154), [PRW](http://virtualflybrain.org/reports/VFB_00102276), [AMMC](http://virtualflybrain.org/reports/VFB_00102273), [aL](http://virtualflybrain.org/reports/VFB_00102119), [LOP](http://virtualflybrain.org/reports/VFB_00102110), [a\'L](http://virtualflybrain.org/reports/VFB_00102121), [bL](http://virtualflybrain.org/reports/VFB_00102123), [ME](http://virtualflybrain.org/reports/VFB_00102107), [PED](http://virtualflybrain.org/reports/VFB_00102118), [CA](http://virtualflybrain.org/reports/VFB_00102114), [NO](http://virtualflybrain.org/reports/VFB_00102282), [GA](http://virtualflybrain.org/reports/VFB_00102281), [AOTU](http://virtualflybrain.org/reports/VFB_00102141), [BU](http://virtualflybrain.org/reports/VFB_00102139), [PLP](http://virtualflybrain.org/reports/VFB_00102152), [GNG](http://virtualflybrain.org/reports/VFB_00102280), [EB](http://virtualflybrain.org/reports/VFB_00102135), [LAL](http://virtualflybrain.org/reports/VFB_00102140), [PB](http://virtualflybrain.org/reports/VFB_00102137), [IPS](http://virtualflybrain.org/reports/VFB_00102218), [b\'L](http://virtualflybrain.org/reports/VFB_00102124), [gL](http://virtualflybrain.org/reports/VFB_00102133), [FB](http://virtualflybrain.org/reports/VFB_00102134), [FLA](http://virtualflybrain.org/reports/VFB_00102274) | From 94ad45adce332d05e273b5ddcff6103a68e5b3bd Mon Sep 17 00:00:00 2001 From: Clare72 Date: Tue, 4 Aug 2026 11:24:19 +0100 Subject: [PATCH 4/5] Restructure Templates page: per-template sections with descriptions, FlyBase references and collapsible painted-domain lists Co-Authored-By: Claude Opus 4.8 --- content/en/docs/Data/templates.md | 116 ++++++++++++++++++++++++------ 1 file changed, 94 insertions(+), 22 deletions(-) diff --git a/content/en/docs/Data/templates.md b/content/en/docs/Data/templates.md index 761fa7c..113e205 100644 --- a/content/en/docs/Data/templates.md +++ b/content/en/docs/Data/templates.md @@ -4,40 +4,112 @@ linkTitle: "Templates" tags: [fly brain atlas,Template,Synaptic_neuropil] weight: 100 description: >- - Summary of templates on Virtual Fly Brain and the painted domains/regions available in those templates. + Reference templates used on Virtual Fly Brain and the painted domains/regions available in each. --- -Canonical templates not only allow for spatial alignment of image data, but also are often painted to make a reference atlas of anatomical regions. Many central nervous system (CNS) templates exist for Drosophila, below we provide a summary of those used in VFB. Templates can be downloaded from their [Term Info](/docs/website-features/terminfo/#data) pages. +Canonical templates allow image data to be spatially aligned, and are often *painted* to +make a reference atlas of anatomical regions. Many central nervous system (CNS) templates +exist for *Drosophila*; below is a summary of those used on VFB, grouped by the part of +the nervous system and life stage they cover. Each template and its painted domains can be +viewed and downloaded from their [Term Info](/docs/website-features/terminfo/#data) pages. -## Central Nervous System from Janelia Research Campus JRC2018 +## Adult brain templates - +### JRC2018 unisex adult brain +JRC2018 unisex adult brain template thumbnail -VFB displays data aligned to the [JRC 2018 unisex brain template](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?id=VFB_00101567&i=VFB_00101567) or [JRC 2018 unisex Ventral Nerve Cord (VNC)](https://v2.virtualflybrain.org/org.geppetto.frontend/geppetto?i=VFB_00200000,VFB_00200000), as appropriate. See [Bogovic et al., "An unbiased template of the Drosophila brain and ventral nerve cord"](https://doi.org/10.1371/journal.pone.0236495) for details of template generation. +The **current standard** adult brain template on VFB. An unbiased, averaged template built from many individual brains by [Bogovic et al., 2020](http://flybase.org/reports/FBrf0247641); most adult brain image data on VFB is aligned to it. Original files: [JRC 2018 Brain templates](https://www.janelia.org/open-science/jrc-2018-brain-templates). [View on VFB](http://virtualflybrain.org/reports/VFB_00101567). -The original files are available from Janelia: [JRC 2018 Brain templates](https://www.janelia.org/open-science/jrc-2018-brain-templates). +
+Painted domains (46) -## Adult Brain from Janelia Research Campus/VFB (JFRC2010/JFRC2) +[ICL](http://virtualflybrain.org/reports/VFB_00102179), [ROB](http://virtualflybrain.org/reports/VFB_00102174), [GOR](http://virtualflybrain.org/reports/VFB_00102214), [SLP](http://virtualflybrain.org/reports/VFB_00102162), [RUB](http://virtualflybrain.org/reports/VFB_00102175), [CRE](http://virtualflybrain.org/reports/VFB_00102171), [SMP](http://virtualflybrain.org/reports/VFB_00102170), [SPS](http://virtualflybrain.org/reports/VFB_00102215), [CAN](http://virtualflybrain.org/reports/VFB_00102275), [SCL](http://virtualflybrain.org/reports/VFB_00102176), [SIP](http://virtualflybrain.org/reports/VFB_00102164), [IB](http://virtualflybrain.org/reports/VFB_00102185), [ATL](http://virtualflybrain.org/reports/VFB_00102190), [AL](http://virtualflybrain.org/reports/VFB_00102201), [EPA](http://virtualflybrain.org/reports/VFB_00102213), [VES](http://virtualflybrain.org/reports/VFB_00102212), [LH](http://virtualflybrain.org/reports/VFB_00102159), [LO](http://virtualflybrain.org/reports/VFB_00102109), [SAD](http://virtualflybrain.org/reports/VFB_00102271), [AME](http://virtualflybrain.org/reports/VFB_00102108), [PVLP](http://virtualflybrain.org/reports/VFB_00102148), [AVLP](http://virtualflybrain.org/reports/VFB_00102146), [WED](http://virtualflybrain.org/reports/VFB_00102154), [PRW](http://virtualflybrain.org/reports/VFB_00102276), [AMMC](http://virtualflybrain.org/reports/VFB_00102273), [aL](http://virtualflybrain.org/reports/VFB_00102119), [LOP](http://virtualflybrain.org/reports/VFB_00102110), [a\'L](http://virtualflybrain.org/reports/VFB_00102121), [bL](http://virtualflybrain.org/reports/VFB_00102123), [ME](http://virtualflybrain.org/reports/VFB_00102107), [PED](http://virtualflybrain.org/reports/VFB_00102118), [CA](http://virtualflybrain.org/reports/VFB_00102114), [NO](http://virtualflybrain.org/reports/VFB_00102282), [GA](http://virtualflybrain.org/reports/VFB_00102281), [AOTU](http://virtualflybrain.org/reports/VFB_00102141), [BU](http://virtualflybrain.org/reports/VFB_00102139), [PLP](http://virtualflybrain.org/reports/VFB_00102152), [GNG](http://virtualflybrain.org/reports/VFB_00102280), [EB](http://virtualflybrain.org/reports/VFB_00102135), [LAL](http://virtualflybrain.org/reports/VFB_00102140), [PB](http://virtualflybrain.org/reports/VFB_00102137), [IPS](http://virtualflybrain.org/reports/VFB_00102218), [b\'L](http://virtualflybrain.org/reports/VFB_00102124), [gL](http://virtualflybrain.org/reports/VFB_00102133), [FB](http://virtualflybrain.org/reports/VFB_00102134), [FLA](http://virtualflybrain.org/reports/VFB_00102274) -Superceeded by [JRC2018](#central-nervous-system-from-janelia-research-campus-jrc2018) +
- +### Adult brain — BrainName standard (Ito2014) +Adult brain — BrainName standard (Ito2014) template thumbnail -Template brain created by Arnim Jenett (Janelia Research Campus), Kazunori Shinomiya and Kei Ito (Tokyo University) from a staining with the neuropil marker [nc82](http://www.flybase.org/reports/FBgn0259246.html). +The reference template for the **BrainName** unified adult brain nomenclature ([Ito et al., 2014](http://flybase.org/reports/FBrf0224194)). A tricolor brain (presynaptic *n-syb*-GFP, postsynaptic Rdl-HA, and nc82) carrying the canonical BrainName neuropil domains. [View on VFB](http://virtualflybrain.org/reports/VFB_00030786). -The voxel size is 0.62x0.62x0.62 microns. +
+Painted domains (75) -The files are available [here](https://github.com/VirtualFlyBrain/DrosAdultBRAINdomains). +[nodulus](http://virtualflybrain.org/reports/VFB_00030789), [lobula](http://virtualflybrain.org/reports/VFB_00030788), [accessory medulla](http://virtualflybrain.org/reports/VFB_00030787), [lobula plate](http://virtualflybrain.org/reports/VFB_00030807), [inferior clamp](http://virtualflybrain.org/reports/VFB_00030797), [antennal mechanosensory and motor center](http://virtualflybrain.org/reports/VFB_00030796), [cantle](http://virtualflybrain.org/reports/VFB_00030795), [bulb](http://virtualflybrain.org/reports/VFB_00030790), [superior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030812), [superior intermediate protocerebrum](http://virtualflybrain.org/reports/VFB_00030813), [superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00030814), [inferior bridge](http://virtualflybrain.org/reports/VFB_00030799), [ellipsoid body](http://virtualflybrain.org/reports/VFB_00030808), [adult antennal lobe](http://virtualflybrain.org/reports/VFB_00030809), [medulla](http://virtualflybrain.org/reports/VFB_00030810), [fan-shaped body](http://virtualflybrain.org/reports/VFB_00030811), [lateral horn](http://virtualflybrain.org/reports/VFB_00030792), [lateral accessory lobe](http://virtualflybrain.org/reports/VFB_00030793), [vest](http://virtualflybrain.org/reports/VFB_00030798), [protocerebral bridge](http://virtualflybrain.org/reports/VFB_00030791), [saddle](http://virtualflybrain.org/reports/VFB_00030794), [wedge commissure](http://virtualflybrain.org/reports/VFB_00030865), [superior fiber system](http://virtualflybrain.org/reports/VFB_00030862), [superior posterior lateral protocerebrum commissure](http://virtualflybrain.org/reports/VFB_00030863), [superior antennal lobe commissure](http://virtualflybrain.org/reports/VFB_00030860), [superior ellipsoid commissure](http://virtualflybrain.org/reports/VFB_00030861), [labro_frontal_nerve - painted domain, BrainName pu](http://virtualflybrain.org/reports/VFB_00030830), [lateral cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030847), [lateral equatorial fascicle](http://virtualflybrain.org/reports/VFB_00030848), [lateral accessory lobe commissure](http://virtualflybrain.org/reports/VFB_00030845), [lateral antennal lobe tract](http://virtualflybrain.org/reports/VFB_00030846), [inferior antennal lobe commissure](http://virtualflybrain.org/reports/VFB_00030843), [inferior fiber system](http://virtualflybrain.org/reports/VFB_00030844), [pyriform fascicle](http://virtualflybrain.org/reports/VFB_00030858), [horizontal ventrolateral protocerebral fascicle](http://virtualflybrain.org/reports/VFB_00030842), [posterior lateral fascicle](http://virtualflybrain.org/reports/VFB_00030855), [superior AMMC commissure](http://virtualflybrain.org/reports/VFB_00030859), [mediolateral antennal lobe tract](http://virtualflybrain.org/reports/VFB_00030853), [posterior posteriolateral protocerebral commissure](http://virtualflybrain.org/reports/VFB_00030857), [medial equatorial fascicle](http://virtualflybrain.org/reports/VFB_00030851), [posterior cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030854), [vertical ventrolateral protocerebral fascicle](http://virtualflybrain.org/reports/VFB_00030864), [median bundle](http://virtualflybrain.org/reports/VFB_00030852), [wedge](http://virtualflybrain.org/reports/VFB_00030817), [gorget](http://virtualflybrain.org/reports/VFB_00030820), [anterior ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030815), [posterior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030818), [calyx of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030821), [horizontal ventrolateral protocerebral fascicle](http://virtualflybrain.org/reports/VFB_00030841), [anterior optic tubercle](http://virtualflybrain.org/reports/VFB_00030819), [superior posterior slope](http://virtualflybrain.org/reports/VFB_00030822), [anterior cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030836), [antenno-subesophageal tract](http://virtualflybrain.org/reports/VFB_00030835), [anterior superior lateral protocerebrum fascicle](http://virtualflybrain.org/reports/VFB_00030839), [anterior dorsal commissure](http://virtualflybrain.org/reports/VFB_00030837), [giant fiber neuron](http://virtualflybrain.org/reports/VFB_00030832), [medial cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030850), [prow](http://virtualflybrain.org/reports/VFB_00030834), [adult gnathal ganglion](http://virtualflybrain.org/reports/VFB_00030833), [vertical lobe of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030803), [pedunculus of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030802), [crepine](http://virtualflybrain.org/reports/VFB_00030801), [antler](http://virtualflybrain.org/reports/VFB_00030800), [superior clamp](http://virtualflybrain.org/reports/VFB_00030824), [mushroom body accessory calyx](http://virtualflybrain.org/reports/VFB_00030806), [flange](http://virtualflybrain.org/reports/VFB_00030805), [medial lobe of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030804), [posterior optic commissure](http://virtualflybrain.org/reports/VFB_00030828), [epaulette](http://virtualflybrain.org/reports/VFB_00030825), [medial antennal lobe tract](http://virtualflybrain.org/reports/VFB_00030826), [inferior posterior slope](http://virtualflybrain.org/reports/VFB_00030823), [posterior ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030816), [great commissure](http://virtualflybrain.org/reports/VFB_00030829), [adult maxillary nerve](http://virtualflybrain.org/reports/VFB_00030831), [anterior optic tract](http://virtualflybrain.org/reports/VFB_00030827) -# Painted domains/regions in the available templates +
-| Template | Painted Domains | 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-| [adult brain template JFRC2](http://virtualflybrain.org/reports/VFB_00017894) | [saddle](http://virtualflybrain.org/reports/VFB_00030600), [epaulette](http://virtualflybrain.org/reports/VFB_00030599), [superior posterior slope](http://virtualflybrain.org/reports/VFB_00030601), [prow](http://virtualflybrain.org/reports/VFB_00030604), [inferior posterior slope](http://virtualflybrain.org/reports/VFB_00030603), [lateral accessory lobe](http://virtualflybrain.org/reports/VFB_00030605), [bulb](http://virtualflybrain.org/reports/VFB_00030625), [lobula](http://virtualflybrain.org/reports/VFB_00030622), [superior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030623), [adult antennal lobe](http://virtualflybrain.org/reports/VFB_00030629), [wedge](http://virtualflybrain.org/reports/VFB_00030626), [anterior optic tubercle](http://virtualflybrain.org/reports/VFB_00030627), [medulla](http://virtualflybrain.org/reports/VFB_00030624), [SIP](http://virtualflybrain.org/reports/VFB_00030628), [accessory medulla](http://virtualflybrain.org/reports/VFB_00030621), [crepine](http://virtualflybrain.org/reports/VFB_00030606), [gall](http://virtualflybrain.org/reports/VFB_00030607), [anterior ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030608), [nodulus](http://virtualflybrain.org/reports/VFB_00030609), [gorget](http://virtualflybrain.org/reports/VFB_00030610), [ellipsoid body](http://virtualflybrain.org/reports/VFB_00030611), [lobula plate](http://virtualflybrain.org/reports/VFB_00030612), [antennal mechanosensory and motor center](http://virtualflybrain.org/reports/VFB_00030613), [inferior bridge](http://virtualflybrain.org/reports/VFB_00030631), [posterior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030630), [fan-shaped body](http://virtualflybrain.org/reports/VFB_00030633), [posterior ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030632), [superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00030614), [vest](http://virtualflybrain.org/reports/VFB_00030616), [antler](http://virtualflybrain.org/reports/VFB_00030615), [superior clamp](http://virtualflybrain.org/reports/VFB_00030618), [inferior clamp](http://virtualflybrain.org/reports/VFB_00030617), [flange](http://virtualflybrain.org/reports/VFB_00030620), [PB](http://virtualflybrain.org/reports/VFB_00030619), [cantle](http://virtualflybrain.org/reports/VFB_00030602), [posterior slope](http://virtualflybrain.org/reports/VFB_00030879), [clamp](http://virtualflybrain.org/reports/VFB_00030876), [lobula complex](http://virtualflybrain.org/reports/VFB_00030877), [adult central complex](http://virtualflybrain.org/reports/VFB_00030866), [adult mushroom body](http://virtualflybrain.org/reports/VFB_00030867), [adult cerebral ganglion](http://virtualflybrain.org/reports/VFB_00030849), [adult subesophageal zone](http://virtualflybrain.org/reports/VFB_00030856), [optic lobe](http://virtualflybrain.org/reports/VFB_00030870), [lateral horn](http://virtualflybrain.org/reports/VFB_00030900), [ventral complex](http://virtualflybrain.org/reports/VFB_00030880), [medial lobe of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030903), [central body](http://virtualflybrain.org/reports/VFB_00030874), [lobe system of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030875), [ventrolateral neuropils](http://virtualflybrain.org/reports/VFB_00030872), [ventromedial neuropils](http://virtualflybrain.org/reports/VFB_00030873), [ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030878), [inferior neuropils](http://virtualflybrain.org/reports/VFB_00030868), [superior neuropils](http://virtualflybrain.org/reports/VFB_00030871), [adult gnathal ganglion](http://virtualflybrain.org/reports/VFB_00030840), [lateral complex](http://virtualflybrain.org/reports/VFB_00030869), [calyx of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030838), [pedunculus of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030901), [vertical lobe of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030902) | -| [adult brain template Ito2014](http://virtualflybrain.org/reports/VFB_00030786) | [nodulus](http://virtualflybrain.org/reports/VFB_00030789), [lobula](http://virtualflybrain.org/reports/VFB_00030788), [accessory medulla](http://virtualflybrain.org/reports/VFB_00030787), [lobula plate](http://virtualflybrain.org/reports/VFB_00030807), [inferior clamp](http://virtualflybrain.org/reports/VFB_00030797), [antennal mechanosensory and motor center](http://virtualflybrain.org/reports/VFB_00030796), [cantle](http://virtualflybrain.org/reports/VFB_00030795), [bulb](http://virtualflybrain.org/reports/VFB_00030790), [superior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030812), [superior intermediate protocerebrum](http://virtualflybrain.org/reports/VFB_00030813), [superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00030814), [inferior bridge](http://virtualflybrain.org/reports/VFB_00030799), [ellipsoid body](http://virtualflybrain.org/reports/VFB_00030808), [adult antennal lobe](http://virtualflybrain.org/reports/VFB_00030809), [medulla](http://virtualflybrain.org/reports/VFB_00030810), [fan-shaped body](http://virtualflybrain.org/reports/VFB_00030811), [lateral horn](http://virtualflybrain.org/reports/VFB_00030792), [lateral accessory lobe](http://virtualflybrain.org/reports/VFB_00030793), [vest](http://virtualflybrain.org/reports/VFB_00030798), [protocerebral bridge](http://virtualflybrain.org/reports/VFB_00030791), [saddle](http://virtualflybrain.org/reports/VFB_00030794), [wedge commissure](http://virtualflybrain.org/reports/VFB_00030865), [superior fiber system](http://virtualflybrain.org/reports/VFB_00030862), [superior posterior lateral protocerebrum commissure](http://virtualflybrain.org/reports/VFB_00030863), [superior antennal lobe commissure](http://virtualflybrain.org/reports/VFB_00030860), [superior ellipsoid commissure](http://virtualflybrain.org/reports/VFB_00030861), [labro_frontal_nerve - painted domain, BrainName pu](http://virtualflybrain.org/reports/VFB_00030830), [lateral cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030847), [lateral equatorial fascicle](http://virtualflybrain.org/reports/VFB_00030848), [lateral accessory lobe commissure](http://virtualflybrain.org/reports/VFB_00030845), [lateral antennal lobe tract](http://virtualflybrain.org/reports/VFB_00030846), [inferior antennal lobe commissure](http://virtualflybrain.org/reports/VFB_00030843), [inferior fiber system](http://virtualflybrain.org/reports/VFB_00030844), [pyriform fascicle](http://virtualflybrain.org/reports/VFB_00030858), [horizontal ventrolateral protocerebral fascicle](http://virtualflybrain.org/reports/VFB_00030842), [posterior lateral fascicle](http://virtualflybrain.org/reports/VFB_00030855), [superior AMMC commissure](http://virtualflybrain.org/reports/VFB_00030859), [mediolateral antennal lobe tract](http://virtualflybrain.org/reports/VFB_00030853), [posterior posteriolateral protocerebral commissure](http://virtualflybrain.org/reports/VFB_00030857), [medial equatorial fascicle](http://virtualflybrain.org/reports/VFB_00030851), [posterior cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030854), [vertical ventrolateral protocerebral fascicle](http://virtualflybrain.org/reports/VFB_00030864), [median bundle](http://virtualflybrain.org/reports/VFB_00030852), [wedge](http://virtualflybrain.org/reports/VFB_00030817), [gorget](http://virtualflybrain.org/reports/VFB_00030820), [anterior ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030815), [posterior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030818), [calyx of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030821), [horizontal ventrolateral protocerebral fascicle](http://virtualflybrain.org/reports/VFB_00030841), [anterior optic tubercle](http://virtualflybrain.org/reports/VFB_00030819), [superior posterior slope](http://virtualflybrain.org/reports/VFB_00030822), [anterior cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030836), [antenno-subesophageal tract](http://virtualflybrain.org/reports/VFB_00030835), [anterior superior lateral protocerebrum fascicle](http://virtualflybrain.org/reports/VFB_00030839), [anterior dorsal commissure](http://virtualflybrain.org/reports/VFB_00030837), [giant fiber neuron](http://virtualflybrain.org/reports/VFB_00030832), [medial cerebro-cervical fascicle](http://virtualflybrain.org/reports/VFB_00030850), [prow](http://virtualflybrain.org/reports/VFB_00030834), [adult gnathal ganglion](http://virtualflybrain.org/reports/VFB_00030833), [vertical lobe of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030803), [pedunculus of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030802), [crepine](http://virtualflybrain.org/reports/VFB_00030801), [antler](http://virtualflybrain.org/reports/VFB_00030800), [superior clamp](http://virtualflybrain.org/reports/VFB_00030824), [mushroom body accessory calyx](http://virtualflybrain.org/reports/VFB_00030806), [flange](http://virtualflybrain.org/reports/VFB_00030805), [medial lobe of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030804), [posterior optic commissure](http://virtualflybrain.org/reports/VFB_00030828), [epaulette](http://virtualflybrain.org/reports/VFB_00030825), [medial antennal lobe tract](http://virtualflybrain.org/reports/VFB_00030826), [inferior posterior slope](http://virtualflybrain.org/reports/VFB_00030823), [posterior ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030816), [great commissure](http://virtualflybrain.org/reports/VFB_00030829), [adult maxillary nerve](http://virtualflybrain.org/reports/VFB_00030831), [anterior optic tract](http://virtualflybrain.org/reports/VFB_00030827) | -|[adult VNS template - Court2018](http://virtualflybrain.org/reports/VFB_00100000)| [tectulum](http://virtualflybrain.org/reports/VFB_00101131), [prothoracic leg nerve](http://virtualflybrain.org/reports/VFB_00100016), [accessory prothoracic nerve](http://virtualflybrain.org/reports/VFB_00100015), [cervical connective](http://virtualflybrain.org/reports/VFB_00100004), [abdominal segment 3 nerve](http://virtualflybrain.org/reports/VFB_00100008), [abdominal segment 4 nerve](http://virtualflybrain.org/reports/VFB_00100007), [posterior dorsal mesothoracic nerve](http://virtualflybrain.org/reports/VFB_00100017), [accessory metathoracic nerve](http://virtualflybrain.org/reports/VFB_00100011), [adult accessory mesothoracic neuromere](http://virtualflybrain.org/reports/VFB_00100020), [metathoracic leg nerve](http://virtualflybrain.org/reports/VFB_00100010), [adult metathoracic neuromere](http://virtualflybrain.org/reports/VFB_00100001), [adult mesothoracic neuromere](http://virtualflybrain.org/reports/VFB_00100002), [dorsal prothoracic nerve](http://virtualflybrain.org/reports/VFB_00100014), [adult prothoracic neuromere](http://virtualflybrain.org/reports/VFB_00100003), [anterior dorsal mesothoracic nerve](http://virtualflybrain.org/reports/VFB_00100013), [abdominal nerve trunk](http://virtualflybrain.org/reports/VFB_00100006), [adult brain cell body rind](http://virtualflybrain.org/reports/VFB_00100021), [abdominal segment 2 nerve](http://virtualflybrain.org/reports/VFB_00100009), [ventral prothoracic nerve](http://virtualflybrain.org/reports/VFB_00100022), [adult abdominal neuromere](http://virtualflybrain.org/reports/VFB_00100005), [accessory mesothoracic nerve](http://virtualflybrain.org/reports/VFB_00100018), [dorsal metathoracic nerve](http://virtualflybrain.org/reports/VFB_00100019), [mesothoracic leg nerve](http://virtualflybrain.org/reports/VFB_00100012) | -| [L3 CNS template - Wood2018](http://virtualflybrain.org/reports/VFB_00049000)| [right dorsomedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050415), [left central subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050398), [right centromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050434), [left ventromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050511), [right central neuropil of A9](http://virtualflybrain.org/reports/VFB_00050509), [right ventral neuropil of A9](http://virtualflybrain.org/reports/VFB_00050499), [right dorsomedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050423), [lower toe](http://virtualflybrain.org/reports/VFB_00050428), [right centromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050448), [right centromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050442), [right central neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050384), [left ventral neuropil of A9](http://virtualflybrain.org/reports/VFB_00050429), [right dorsomedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050426), [left ventromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050485), [ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00050397), [left ventromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050497), [left dorsomedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050372), [right central neuropil of T3](http://virtualflybrain.org/reports/VFB_00050387), [right central neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050382), [left central neuropil of A3](http://virtualflybrain.org/reports/VFB_00050407), [right T2 leg neuropil](http://virtualflybrain.org/reports/VFB_00050510), [right central neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050432), [right central neuropil of A3](http://virtualflybrain.org/reports/VFB_00050390), [right central subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050381), [left dorsomedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050374), [left central neuropil of T1](http://virtualflybrain.org/reports/VFB_00050402), [right central neuropil of A4](http://virtualflybrain.org/reports/VFB_00050391), [left central neuropil of A5](http://virtualflybrain.org/reports/VFB_00050409), [left dorsomedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050371), [right centromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050437), [right centromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050435), [right centromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050443), [right centromedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050439), [left central neuropil of A8](http://virtualflybrain.org/reports/VFB_00050412), [right dorsomedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050420), [right dorsomedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050416), [left dorsomedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050379), [right central neuropil of A6](http://virtualflybrain.org/reports/VFB_00050393), [right central neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050383), [protocerebral bridge - primordial](http://virtualflybrain.org/reports/VFB_00050396), [left central neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050399), [left dorsomedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050376), [left dorsolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050328), [left central neuropil of A4](http://virtualflybrain.org/reports/VFB_00050408), [left ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050357), [right central neuropil of A7](http://virtualflybrain.org/reports/VFB_00050394), [right central neuropil of A8](http://virtualflybrain.org/reports/VFB_00050395), [right central neuropil of A2](http://virtualflybrain.org/reports/VFB_00050389), [left dorsomedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050375), [left ventrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050361), [left ventrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050365), [left dorsomedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050377), [left central neuropil of T2](http://virtualflybrain.org/reports/VFB_00050403), [left central neuropil of A1](http://virtualflybrain.org/reports/VFB_00050405), [left central neuropil of T3](http://virtualflybrain.org/reports/VFB_00050404), [spur of mushroom body](http://virtualflybrain.org/reports/VFB_00050504), [left dorsomedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050378), [right T1 leg neuropil](http://virtualflybrain.org/reports/VFB_00050334), [left dorsomedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050368), [right dorsolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050336), [left dorsomedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050370), [left dorsomedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050369), [right dorsolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050340), [left central neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050401), [right dorsolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050337), [left T3 leg neuropil](http://virtualflybrain.org/reports/VFB_00050313), [crepine](http://virtualflybrain.org/reports/VFB_00050310), [right ventrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050307), [right ventrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050297), [right dorsolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050342), [left dorsolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050325), [left T1 leg neuropil](http://virtualflybrain.org/reports/VFB_00050330), [left dorsolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050315), [left ventrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050353), [left dorsolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050321), [right central neuropil of T1](http://virtualflybrain.org/reports/VFB_00050385), [posterior ventromedial cerebrum](http://virtualflybrain.org/reports/VFB_00050331), [left ventrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050352), [left dorsomedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050373), [left dorsomedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050380), [left ventrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050359), [left ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050355), [left centromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050480), [medial lobe of mushroom body](http://virtualflybrain.org/reports/VFB_00050501), [left ventromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050486), [right dorsal neuropil of A9](http://virtualflybrain.org/reports/VFB_00050350), [right dorsolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050348), [left ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050356), [left ventrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050351), [left dorsomedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050367), [posterior inferior protocerebrum](http://virtualflybrain.org/reports/VFB_00050312), [left ventrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050360), [left dorsolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050318), [left ventrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050363), [left ventrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050354), [left dorsolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050324), [right ventrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050296), [right ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050301), [left centrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050282), [left centrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050292), [left dorsolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050326), [left dorsolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050319), [left dorsolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050316), [right ventrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050304), [nodulus - primordial](http://virtualflybrain.org/reports/VFB_00050293), [left centrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050286), [right dorsolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050338), [right dorsolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050345), [right dorsolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050343), [right dorsolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050347), [right dorsolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050335), [left ventrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050358), [left ventrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050364), [left dorsomedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050366), [left ventrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050362), [left dorsolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050320), [right ventrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050308), [right ventrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050306), [right ventrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050305), [right ventrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050303), [posterior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00050329), [left dorsolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050317), [right centrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050262), [right centrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050269), [right centrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050266), [left T2 leg neuropil](http://virtualflybrain.org/reports/VFB_00050506), [left centrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050287), [left centrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050288), [right centrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050270), [fan-shaped body - primordial](http://virtualflybrain.org/reports/VFB_00050277), [right ventrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050298), [right ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050300), [left centrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050283), [left centrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050278), [left centrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050281), [left centrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050290), [right dorsolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050339), [right dorsolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050341), [right dorsolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050344), [left dorsal neuropil of A9](http://virtualflybrain.org/reports/VFB_00050349), [right dorsolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050346), [left dorsolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050327), [anterior ventromedial cerebrum](http://virtualflybrain.org/reports/VFB_00050332), [ventromedial cerebrum](http://virtualflybrain.org/reports/VFB_00050333), [left centrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050284), [posterior superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00050274), [right centrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050267), [left ventromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050494), [left centrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050289), [left dorsomedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050294), [left central neuropil of A9](http://virtualflybrain.org/reports/VFB_00050508), [superior intermediate protocerebrum](http://virtualflybrain.org/reports/VFB_00050257), [mushroom body](http://virtualflybrain.org/reports/VFB_00050505), [anterior superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00050275), [right centrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050263), [right centrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050268), [right centrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050271), [right centrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050265), [left central neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050498), [pedunculus of mushroom body](http://virtualflybrain.org/reports/VFB_00050500), [right centrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050261), [right centrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050273), [right centrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050272), [right centrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050264), [left centrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050291), [left dorsolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050323), [right ventrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050295), [vertical lobe of mushroom body](http://virtualflybrain.org/reports/VFB_00050503), [left centromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050481), [left ventromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050492), [left dorsolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050322), [lateral accessory lobe](http://virtualflybrain.org/reports/VFB_00050314), [right ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050299), [right ventrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050302), [right T3 leg neuropil](http://virtualflybrain.org/reports/VFB_00050311), [right ventrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050309), [right centromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050445), [calyx of mushroom body](http://virtualflybrain.org/reports/VFB_00050502), [left ventromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050483), [left ventromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050484), [left centromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050476), [left centromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050482), [left centromedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050472), [right centromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050466), [right ventromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050450), [antennal lobe](http://virtualflybrain.org/reports/VFB_00050465), [superior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00050464), [right ventromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050463), [right ventromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050461), [right ventromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050457), [left ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050487), [left ventromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050493), [left ventromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050495), [right ventromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050459), [right ventromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050460), [right ventromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050451), [right ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050455), [lateral appendix of mushroom body](http://virtualflybrain.org/reports/VFB_00050507), [left centrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050279), [left ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050489), [left ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050488), [right centrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050260), [left ventromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050490), [left centromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050479), [left centrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050285), [right dorsomedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050414), [right centromedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050440), [left central neuropil of A6](http://virtualflybrain.org/reports/VFB_00050410), [left central neuropil of A7](http://virtualflybrain.org/reports/VFB_00050411), [right dorsomedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050413), [left centromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050477), [right centromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050444), [right centromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050447), [left centromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050468), [left centromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050475), [right ventromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050449), [left centromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050478), [left centromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050469), [left centromedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050474), [clamp](http://virtualflybrain.org/reports/VFB_00050433), [right ventromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050452), [right centromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050436), [right ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050454), [right centromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050446), [right ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050453), [right ventromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050456), [left centromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050467), [right dorsomedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050421), [right dorsomedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050422), [right centromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050441), [left ventromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050491), [left ventromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050496), [right dorsomedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050258), [right ventromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050458), [right centrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050259), [left centrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050280), [superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00050276), [left centromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050471), [right ventromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050462), [left centromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050470), [left central neuropil of A2](http://virtualflybrain.org/reports/VFB_00050406), [left central neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050400), [right dorsomedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050417), [left centromedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050473), [right ventromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050431), [right central neuropil of T2](http://virtualflybrain.org/reports/VFB_00050386), [right central neuropil of A1](http://virtualflybrain.org/reports/VFB_00050388), [right central neuropil of A5](http://virtualflybrain.org/reports/VFB_00050392), [anterior optic tubercle primordial](http://virtualflybrain.org/reports/VFB_00050430), [right centromedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050438), [right dorsomedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050424), [right dorsomedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050425), [right dorsomedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050427), [right dorsomedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050419), [right dorsomedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050418) | -| [L1 larval CNS ssTEM - Cardona/Janelia](http://virtualflybrain.org/reports/VFB_00050000) | [Whole L1 CNS envelope](http://virtualflybrain.org/reports/VFB_001091yb), [Larval brain (left)](http://virtualflybrain.org/reports/VFB_001091yc), [Larval brain (right)](http://virtualflybrain.org/reports/VFB_001091yd), [Larval subesophageal zone (left)](http://virtualflybrain.org/reports/VFB_001091ye), [Larval subesophageal zone (right)](http://virtualflybrain.org/reports/VFB_001091yf), [Prothoracic neuromere T1 (left)](http://virtualflybrain.org/reports/VFB_001091yg), [Prothoracic neuromere T1 (right)](http://virtualflybrain.org/reports/VFB_001091yh), [Mesothoracic neuromere T2 (left)](http://virtualflybrain.org/reports/VFB_001091yi), [Mesothoracic neuromere T2 (right)](http://virtualflybrain.org/reports/VFB_001091yj), [Metathoracic neuromere T3 (left)](http://virtualflybrain.org/reports/VFB_001091yk), [Metathoracic neuromere T3 (right)](http://virtualflybrain.org/reports/VFB_001091yl), [Abdominal neuromere A1 (left)](http://virtualflybrain.org/reports/VFB_001091ym), [Abdominal neuromere A1 (right)](http://virtualflybrain.org/reports/VFB_001091yn), [Abdominal neuromere A2 (left)](http://virtualflybrain.org/reports/VFB_001091yo), [Abdominal neuromere A2 (right)](http://virtualflybrain.org/reports/VFB_001091yp), [Abdominal neuromere A3 (left)](http://virtualflybrain.org/reports/VFB_001091yq), [Abdominal neuromere A3 (right)](http://virtualflybrain.org/reports/VFB_001091yr), [Abdominal neuromere A4 (left)](http://virtualflybrain.org/reports/VFB_001091ys), [Abdominal neuromere A4 (right)](http://virtualflybrain.org/reports/VFB_001091yt), [Abdominal neuromere A5 (left)](http://virtualflybrain.org/reports/VFB_001091yu), [Abdominal neuromere A5 (right)](http://virtualflybrain.org/reports/VFB_001091yv), [Abdominal neuromere A6 (left)](http://virtualflybrain.org/reports/VFB_001091yw), [Abdominal neuromere A6 (right)](http://virtualflybrain.org/reports/VFB_001091yx), [Abdominal neuromere A7 (left)](http://virtualflybrain.org/reports/VFB_001091yy), [Abdominal neuromere A7 (right)](http://virtualflybrain.org/reports/VFB_001091yz), [Abdominal neuromere A8 (left)](http://virtualflybrain.org/reports/VFB_001091z0), [Abdominal neuromere A8 (right)](http://virtualflybrain.org/reports/VFB_001091z1) | -| [JRC_FlyEM_Hemibrain](http://virtualflybrain.org/reports/VFB_00101384) | [PB(R3)](http://virtualflybrain.org/reports/VFB_00101491), [GOR(L)](http://virtualflybrain.org/reports/VFB_00101528), [BU(L)](http://virtualflybrain.org/reports/VFB_00101524), [LAL(L)](http://virtualflybrain.org/reports/VFB_00101526), [ATL(L)](http://virtualflybrain.org/reports/VFB_00101487), [GF(R)](http://virtualflybrain.org/reports/VFB_00101488), [PB(R1)](http://virtualflybrain.org/reports/VFB_00101489), [PB(R2)](http://virtualflybrain.org/reports/VFB_00101490), [VES(L)](http://virtualflybrain.org/reports/VFB_00101535), [NO1(R)](http://virtualflybrain.org/reports/VFB_00101543), [mALT(L)](http://virtualflybrain.org/reports/VFB_00101538), [CA(L)](http://virtualflybrain.org/reports/VFB_00101533), [PB(L6)](http://virtualflybrain.org/reports/VFB_00101503), [NO3(L)](http://virtualflybrain.org/reports/VFB_00101554), [PB(L8)](http://virtualflybrain.org/reports/VFB_00101505), [PB(L7)](http://virtualflybrain.org/reports/VFB_00101504), [SMP(L)](http://virtualflybrain.org/reports/VFB_00101507), [PB(L9)](http://virtualflybrain.org/reports/VFB_00101506), [gL(L)](http://virtualflybrain.org/reports/VFB_00101509), [SIP(L)](http://virtualflybrain.org/reports/VFB_00101508), [b\'L(L)](http://virtualflybrain.org/reports/VFB_00101511), [bL(L)](http://virtualflybrain.org/reports/VFB_00101510), [PB(R5)](http://virtualflybrain.org/reports/VFB_00101493), [CRE(L)](http://virtualflybrain.org/reports/VFB_00101512), [PB(R4)](http://virtualflybrain.org/reports/VFB_00101492), [PB(R7)](http://virtualflybrain.org/reports/VFB_00101495), [PB(R6)](http://virtualflybrain.org/reports/VFB_00101494), [PB(R8)](http://virtualflybrain.org/reports/VFB_00101496), [PB(L1)](http://virtualflybrain.org/reports/VFB_00101498), [PB(R9)](http://virtualflybrain.org/reports/VFB_00101497), [PB(L3)](http://virtualflybrain.org/reports/VFB_00101500), [PB(L2)](http://virtualflybrain.org/reports/VFB_00101499), [PB(L5)](http://virtualflybrain.org/reports/VFB_00101502), [PB(L4)](http://virtualflybrain.org/reports/VFB_00101501), [SCL(L)](http://virtualflybrain.org/reports/VFB_00101529), [SPS(L)](http://virtualflybrain.org/reports/VFB_00101532), [ICL(L)](http://virtualflybrain.org/reports/VFB_00101530), [RUB(L)](http://virtualflybrain.org/reports/VFB_00101515), [a\'L(L)](http://virtualflybrain.org/reports/VFB_00101514), [aL(L)](http://virtualflybrain.org/reports/VFB_00101513), [NO2(R)](http://virtualflybrain.org/reports/VFB_00101546), [NO3(R)](http://virtualflybrain.org/reports/VFB_00101548), [NO1(L)](http://virtualflybrain.org/reports/VFB_00101550), [NO2(L)](http://virtualflybrain.org/reports/VFB_00101553), [AL(L)](http://virtualflybrain.org/reports/VFB_00101484), [AOT(R)](http://virtualflybrain.org/reports/VFB_00101483), [GA(R)](http://virtualflybrain.org/reports/VFB_00101486), [POC](http://virtualflybrain.org/reports/VFB_00101485), [IPS(R)](http://virtualflybrain.org/reports/VFB_00101455), [SAD](http://virtualflybrain.org/reports/VFB_00101456), [GC](http://virtualflybrain.org/reports/VFB_00101478), [mALT(R)](http://virtualflybrain.org/reports/VFB_00101477), [AL(R)](http://virtualflybrain.org/reports/VFB_00101449), [VES(R)](http://virtualflybrain.org/reports/VFB_00101450), [SPS(R)](http://virtualflybrain.org/reports/VFB_00101454), [ATL(R)](http://virtualflybrain.org/reports/VFB_00101445), [IB](http://virtualflybrain.org/reports/VFB_00101443), [ICL(R)](http://virtualflybrain.org/reports/VFB_00101442), [GOR(R)](http://virtualflybrain.org/reports/VFB_00101453), [EPA(R)](http://virtualflybrain.org/reports/VFB_00101451), [CAN(R)](http://virtualflybrain.org/reports/VFB_00101459), [PRW](http://virtualflybrain.org/reports/VFB_00101460), [FLA(R)](http://virtualflybrain.org/reports/VFB_00101458), [GNG](http://virtualflybrain.org/reports/VFB_00101468), [CA(R)](http://virtualflybrain.org/reports/VFB_00101389), [LOP(R)](http://virtualflybrain.org/reports/VFB_00101388), [PED(R)](http://virtualflybrain.org/reports/VFB_00101390), [AMMC](http://virtualflybrain.org/reports/VFB_00101457), [b\'L(R)](http://virtualflybrain.org/reports/VFB_00101396), [LO(R)](http://virtualflybrain.org/reports/VFB_00101387), [ME(R)](http://virtualflybrain.org/reports/VFB_00101385), [AME(R)](http://virtualflybrain.org/reports/VFB_00101386), [a\'L(R)](http://virtualflybrain.org/reports/VFB_00101393), [aL(R)](http://virtualflybrain.org/reports/VFB_00101391), [bL(R)](http://virtualflybrain.org/reports/VFB_00101395), [RUB(R)](http://virtualflybrain.org/reports/VFB_00101440), [SCL(R)](http://virtualflybrain.org/reports/VFB_00101441), [SMP(R)](http://virtualflybrain.org/reports/VFB_00101437), [CRE(R)](http://virtualflybrain.org/reports/VFB_00101438), [ROB(R)](http://virtualflybrain.org/reports/VFB_00101439), [WED(R)](http://virtualflybrain.org/reports/VFB_00101419), [SLP(R)](http://virtualflybrain.org/reports/VFB_00101435), [LH(R)](http://virtualflybrain.org/reports/VFB_00101434), [SIP(R)](http://virtualflybrain.org/reports/VFB_00101436), [PVLP(R)](http://virtualflybrain.org/reports/VFB_00101416), [AVLP(R)](http://virtualflybrain.org/reports/VFB_00101408), [PLP(R)](http://virtualflybrain.org/reports/VFB_00101417), [AOTU(R)](http://virtualflybrain.org/reports/VFB_00101407), [PB](http://virtualflybrain.org/reports/VFB_00101401), [LAL(R)](http://virtualflybrain.org/reports/VFB_00101403), [FB](http://virtualflybrain.org/reports/VFB_00101398), [BU(R)](http://virtualflybrain.org/reports/VFB_00101402), [EB](http://virtualflybrain.org/reports/VFB_00101400), [gL(R)](http://virtualflybrain.org/reports/VFB_00101397), [AB(R)](http://virtualflybrain.org/reports/VFB_00101399), [AB(L)](http://virtualflybrain.org/reports/VFB_00102288), [EPA(L)](http://virtualflybrain.org/reports/VFB_00102287) | -| [JRC2018Unisex](http://virtualflybrain.org/reports/VFB_00101567) | [ICL](http://virtualflybrain.org/reports/VFB_00102179), [ROB](http://virtualflybrain.org/reports/VFB_00102174), [GOR](http://virtualflybrain.org/reports/VFB_00102214), [SLP](http://virtualflybrain.org/reports/VFB_00102162), [RUB](http://virtualflybrain.org/reports/VFB_00102175), [CRE](http://virtualflybrain.org/reports/VFB_00102171), [SMP](http://virtualflybrain.org/reports/VFB_00102170), [SPS](http://virtualflybrain.org/reports/VFB_00102215), [CAN](http://virtualflybrain.org/reports/VFB_00102275), [SCL](http://virtualflybrain.org/reports/VFB_00102176), [SIP](http://virtualflybrain.org/reports/VFB_00102164), [IB](http://virtualflybrain.org/reports/VFB_00102185), [ATL](http://virtualflybrain.org/reports/VFB_00102190), [AL](http://virtualflybrain.org/reports/VFB_00102201), [EPA](http://virtualflybrain.org/reports/VFB_00102213), [VES](http://virtualflybrain.org/reports/VFB_00102212), [LH](http://virtualflybrain.org/reports/VFB_00102159), [LO](http://virtualflybrain.org/reports/VFB_00102109), [SAD](http://virtualflybrain.org/reports/VFB_00102271), [AME](http://virtualflybrain.org/reports/VFB_00102108), [PVLP](http://virtualflybrain.org/reports/VFB_00102148), [AVLP](http://virtualflybrain.org/reports/VFB_00102146), [WED](http://virtualflybrain.org/reports/VFB_00102154), [PRW](http://virtualflybrain.org/reports/VFB_00102276), [AMMC](http://virtualflybrain.org/reports/VFB_00102273), [aL](http://virtualflybrain.org/reports/VFB_00102119), [LOP](http://virtualflybrain.org/reports/VFB_00102110), [a\'L](http://virtualflybrain.org/reports/VFB_00102121), [bL](http://virtualflybrain.org/reports/VFB_00102123), [ME](http://virtualflybrain.org/reports/VFB_00102107), [PED](http://virtualflybrain.org/reports/VFB_00102118), [CA](http://virtualflybrain.org/reports/VFB_00102114), [NO](http://virtualflybrain.org/reports/VFB_00102282), [GA](http://virtualflybrain.org/reports/VFB_00102281), [AOTU](http://virtualflybrain.org/reports/VFB_00102141), [BU](http://virtualflybrain.org/reports/VFB_00102139), [PLP](http://virtualflybrain.org/reports/VFB_00102152), [GNG](http://virtualflybrain.org/reports/VFB_00102280), [EB](http://virtualflybrain.org/reports/VFB_00102135), [LAL](http://virtualflybrain.org/reports/VFB_00102140), [PB](http://virtualflybrain.org/reports/VFB_00102137), [IPS](http://virtualflybrain.org/reports/VFB_00102218), [b\'L](http://virtualflybrain.org/reports/VFB_00102124), [gL](http://virtualflybrain.org/reports/VFB_00102133), [FB](http://virtualflybrain.org/reports/VFB_00102134), [FLA](http://virtualflybrain.org/reports/VFB_00102274) | +### Adult brain — JFRC2 (Jenett/JFRC2010) +Adult brain — JFRC2 (Jenett/JFRC2010) template thumbnail +An earlier adult brain template created by Arnim Jenett ([Jenett et al., 2012](http://flybase.org/reports/FBrf0219813)) and painted to the BrainName standard by Jenett, Shinomiya and Ito from an nc82 (neuropil marker) staining; voxel size 0.62 µm isotropic. **Superseded** by the JRC2018 unisex brain above, but retained because some older data is aligned to it. Painted-domain source files: [DrosAdultBRAINdomains](https://github.com/VirtualFlyBrain/DrosAdultBRAINdomains). [View on VFB](http://virtualflybrain.org/reports/VFB_00017894). + +
+Painted domains (58) + +[saddle](http://virtualflybrain.org/reports/VFB_00030600), [epaulette](http://virtualflybrain.org/reports/VFB_00030599), [superior posterior slope](http://virtualflybrain.org/reports/VFB_00030601), [prow](http://virtualflybrain.org/reports/VFB_00030604), [inferior posterior slope](http://virtualflybrain.org/reports/VFB_00030603), [lateral accessory lobe](http://virtualflybrain.org/reports/VFB_00030605), [bulb](http://virtualflybrain.org/reports/VFB_00030625), [lobula](http://virtualflybrain.org/reports/VFB_00030622), [superior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030623), [adult antennal lobe](http://virtualflybrain.org/reports/VFB_00030629), [wedge](http://virtualflybrain.org/reports/VFB_00030626), [anterior optic tubercle](http://virtualflybrain.org/reports/VFB_00030627), [medulla](http://virtualflybrain.org/reports/VFB_00030624), [SIP](http://virtualflybrain.org/reports/VFB_00030628), [accessory medulla](http://virtualflybrain.org/reports/VFB_00030621), [crepine](http://virtualflybrain.org/reports/VFB_00030606), [gall](http://virtualflybrain.org/reports/VFB_00030607), [anterior ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030608), [nodulus](http://virtualflybrain.org/reports/VFB_00030609), [gorget](http://virtualflybrain.org/reports/VFB_00030610), [ellipsoid body](http://virtualflybrain.org/reports/VFB_00030611), [lobula plate](http://virtualflybrain.org/reports/VFB_00030612), [antennal mechanosensory and motor center](http://virtualflybrain.org/reports/VFB_00030613), [inferior bridge](http://virtualflybrain.org/reports/VFB_00030631), [posterior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030630), [fan-shaped body](http://virtualflybrain.org/reports/VFB_00030633), [posterior ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030632), [superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00030614), [vest](http://virtualflybrain.org/reports/VFB_00030616), [antler](http://virtualflybrain.org/reports/VFB_00030615), [superior clamp](http://virtualflybrain.org/reports/VFB_00030618), [inferior clamp](http://virtualflybrain.org/reports/VFB_00030617), [flange](http://virtualflybrain.org/reports/VFB_00030620), [PB](http://virtualflybrain.org/reports/VFB_00030619), [cantle](http://virtualflybrain.org/reports/VFB_00030602), [posterior slope](http://virtualflybrain.org/reports/VFB_00030879), [clamp](http://virtualflybrain.org/reports/VFB_00030876), [lobula complex](http://virtualflybrain.org/reports/VFB_00030877), [adult central complex](http://virtualflybrain.org/reports/VFB_00030866), [adult mushroom body](http://virtualflybrain.org/reports/VFB_00030867), [adult cerebral ganglion](http://virtualflybrain.org/reports/VFB_00030849), [adult subesophageal zone](http://virtualflybrain.org/reports/VFB_00030856), [optic lobe](http://virtualflybrain.org/reports/VFB_00030870), [lateral horn](http://virtualflybrain.org/reports/VFB_00030900), [ventral complex](http://virtualflybrain.org/reports/VFB_00030880), [medial lobe of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030903), [central body](http://virtualflybrain.org/reports/VFB_00030874), [lobe system of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030875), [ventrolateral neuropils](http://virtualflybrain.org/reports/VFB_00030872), [ventromedial neuropils](http://virtualflybrain.org/reports/VFB_00030873), [ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00030878), [inferior neuropils](http://virtualflybrain.org/reports/VFB_00030868), [superior neuropils](http://virtualflybrain.org/reports/VFB_00030871), [adult gnathal ganglion](http://virtualflybrain.org/reports/VFB_00030840), [lateral complex](http://virtualflybrain.org/reports/VFB_00030869), [calyx of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030838), [pedunculus of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030901), [vertical lobe of adult mushroom body](http://virtualflybrain.org/reports/VFB_00030902) + +
+ +## Adult ventral nerve cord templates + +### JRC2018 unisex VNC +JRC2018 unisex VNC template thumbnail + +The **current standard** adult ventral nerve cord (VNC) template — the VNC counterpart to the JRC2018 unisex brain, built by combining male and female confocal images ([Bogovic et al., 2020](http://flybase.org/reports/FBrf0247641)). Adult VNC connectome data (e.g. MANC) is aligned to it; its neuropil regions are available from the template's [Term Info](/docs/website-features/terminfo/#data) page. [View on VFB](http://virtualflybrain.org/reports/VFB_00200000). + +### Adult VNS — Court2018 +Adult VNS — Court2018 template thumbnail + +An adult VNC atlas ([Court et al., 2020](http://flybase.org/reports/FBrf0246815)): annotated confocal images registered to a common coordinate space, providing a standard adult VNC neuropil and tract nomenclature. [View on VFB](http://virtualflybrain.org/reports/VFB_00100000). + +
+Painted domains (23) + +[tectulum](http://virtualflybrain.org/reports/VFB_00101131), [prothoracic leg nerve](http://virtualflybrain.org/reports/VFB_00100016), [accessory prothoracic nerve](http://virtualflybrain.org/reports/VFB_00100015), [cervical connective](http://virtualflybrain.org/reports/VFB_00100004), [abdominal segment 3 nerve](http://virtualflybrain.org/reports/VFB_00100008), [abdominal segment 4 nerve](http://virtualflybrain.org/reports/VFB_00100007), [posterior dorsal mesothoracic nerve](http://virtualflybrain.org/reports/VFB_00100017), [accessory metathoracic nerve](http://virtualflybrain.org/reports/VFB_00100011), [adult accessory mesothoracic neuromere](http://virtualflybrain.org/reports/VFB_00100020), [metathoracic leg nerve](http://virtualflybrain.org/reports/VFB_00100010), [adult metathoracic neuromere](http://virtualflybrain.org/reports/VFB_00100001), [adult mesothoracic neuromere](http://virtualflybrain.org/reports/VFB_00100002), [dorsal prothoracic nerve](http://virtualflybrain.org/reports/VFB_00100014), [adult prothoracic neuromere](http://virtualflybrain.org/reports/VFB_00100003), [anterior dorsal mesothoracic nerve](http://virtualflybrain.org/reports/VFB_00100013), [abdominal nerve trunk](http://virtualflybrain.org/reports/VFB_00100006), [adult brain cell body rind](http://virtualflybrain.org/reports/VFB_00100021), [abdominal segment 2 nerve](http://virtualflybrain.org/reports/VFB_00100009), [ventral prothoracic nerve](http://virtualflybrain.org/reports/VFB_00100022), [adult abdominal neuromere](http://virtualflybrain.org/reports/VFB_00100005), [accessory mesothoracic nerve](http://virtualflybrain.org/reports/VFB_00100018), [dorsal metathoracic nerve](http://virtualflybrain.org/reports/VFB_00100019), [mesothoracic leg nerve](http://virtualflybrain.org/reports/VFB_00100012) + +
+ +## Larval CNS templates + +### L1 larval CNS ssTEM (Cardona/Janelia) +L1 larval CNS ssTEM (Cardona/Janelia) template thumbnail + +The “Seymour” first-instar (L1) larval CNS: a whole-CNS serial-section TEM (ssTEM) volume (Cardona/Janelia; [Ohyama et al., 2015](http://flybase.org/reports/FBrf0228257)). The reference space for L1 larval EM connectome data. [View on VFB](http://virtualflybrain.org/reports/VFB_00050000). + +
+Painted domains (27) + +[Whole L1 CNS envelope](http://virtualflybrain.org/reports/VFB_001091yb), [Larval brain (left)](http://virtualflybrain.org/reports/VFB_001091yc), [Larval brain (right)](http://virtualflybrain.org/reports/VFB_001091yd), [Larval subesophageal zone (left)](http://virtualflybrain.org/reports/VFB_001091ye), [Larval subesophageal zone (right)](http://virtualflybrain.org/reports/VFB_001091yf), [Prothoracic neuromere T1 (left)](http://virtualflybrain.org/reports/VFB_001091yg), [Prothoracic neuromere T1 (right)](http://virtualflybrain.org/reports/VFB_001091yh), [Mesothoracic neuromere T2 (left)](http://virtualflybrain.org/reports/VFB_001091yi), [Mesothoracic neuromere T2 (right)](http://virtualflybrain.org/reports/VFB_001091yj), [Metathoracic neuromere T3 (left)](http://virtualflybrain.org/reports/VFB_001091yk), [Metathoracic neuromere T3 (right)](http://virtualflybrain.org/reports/VFB_001091yl), [Abdominal neuromere A1 (left)](http://virtualflybrain.org/reports/VFB_001091ym), [Abdominal neuromere A1 (right)](http://virtualflybrain.org/reports/VFB_001091yn), [Abdominal neuromere A2 (left)](http://virtualflybrain.org/reports/VFB_001091yo), [Abdominal neuromere A2 (right)](http://virtualflybrain.org/reports/VFB_001091yp), [Abdominal neuromere A3 (left)](http://virtualflybrain.org/reports/VFB_001091yq), [Abdominal neuromere A3 (right)](http://virtualflybrain.org/reports/VFB_001091yr), [Abdominal neuromere A4 (left)](http://virtualflybrain.org/reports/VFB_001091ys), [Abdominal neuromere A4 (right)](http://virtualflybrain.org/reports/VFB_001091yt), [Abdominal neuromere A5 (left)](http://virtualflybrain.org/reports/VFB_001091yu), [Abdominal neuromere A5 (right)](http://virtualflybrain.org/reports/VFB_001091yv), [Abdominal neuromere A6 (left)](http://virtualflybrain.org/reports/VFB_001091yw), [Abdominal neuromere A6 (right)](http://virtualflybrain.org/reports/VFB_001091yx), [Abdominal neuromere A7 (left)](http://virtualflybrain.org/reports/VFB_001091yy), [Abdominal neuromere A7 (right)](http://virtualflybrain.org/reports/VFB_001091yz), [Abdominal neuromere A8 (left)](http://virtualflybrain.org/reports/VFB_001091z0), [Abdominal neuromere A8 (right)](http://virtualflybrain.org/reports/VFB_001091z1) + +
+ +### L3 CNS template (Wood2018) +L3 CNS template (Wood2018) template thumbnail + +A third-instar (L3) larval CNS confocal template (Wood et al., 2018) imaging neuroglian (BP-104) staining of the central brain and ventral nerve cord, carrying the L3 neuropil domains. [View on VFB](http://virtualflybrain.org/reports/VFB_00049000). + +
+Painted domains (255) + +[right dorsomedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050415), [left central subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050398), [right centromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050434), [left ventromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050511), [right central neuropil of A9](http://virtualflybrain.org/reports/VFB_00050509), [right ventral neuropil of A9](http://virtualflybrain.org/reports/VFB_00050499), [right dorsomedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050423), [lower toe](http://virtualflybrain.org/reports/VFB_00050428), [right centromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050448), [right centromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050442), [right central neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050384), [left ventral neuropil of A9](http://virtualflybrain.org/reports/VFB_00050429), [right dorsomedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050426), [left ventromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050485), [ventrolateral protocerebrum](http://virtualflybrain.org/reports/VFB_00050397), [left ventromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050497), [left dorsomedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050372), [right central neuropil of T3](http://virtualflybrain.org/reports/VFB_00050387), [right central neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050382), [left central neuropil of A3](http://virtualflybrain.org/reports/VFB_00050407), [right T2 leg neuropil](http://virtualflybrain.org/reports/VFB_00050510), [right central neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050432), [right central neuropil of A3](http://virtualflybrain.org/reports/VFB_00050390), [right central subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050381), [left dorsomedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050374), [left central neuropil of T1](http://virtualflybrain.org/reports/VFB_00050402), [right central neuropil of A4](http://virtualflybrain.org/reports/VFB_00050391), [left central neuropil of A5](http://virtualflybrain.org/reports/VFB_00050409), [left dorsomedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050371), [right centromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050437), [right centromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050435), [right centromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050443), [right centromedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050439), [left central neuropil of A8](http://virtualflybrain.org/reports/VFB_00050412), [right dorsomedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050420), [right dorsomedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050416), [left dorsomedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050379), [right central neuropil of A6](http://virtualflybrain.org/reports/VFB_00050393), [right central neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050383), [protocerebral bridge - primordial](http://virtualflybrain.org/reports/VFB_00050396), [left central neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050399), [left dorsomedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050376), [left dorsolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050328), [left central neuropil of A4](http://virtualflybrain.org/reports/VFB_00050408), [left ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050357), [right central neuropil of A7](http://virtualflybrain.org/reports/VFB_00050394), [right central neuropil of A8](http://virtualflybrain.org/reports/VFB_00050395), [right central neuropil of A2](http://virtualflybrain.org/reports/VFB_00050389), [left dorsomedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050375), [left ventrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050361), [left ventrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050365), [left dorsomedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050377), [left central neuropil of T2](http://virtualflybrain.org/reports/VFB_00050403), [left central neuropil of A1](http://virtualflybrain.org/reports/VFB_00050405), [left central neuropil of T3](http://virtualflybrain.org/reports/VFB_00050404), [spur of mushroom body](http://virtualflybrain.org/reports/VFB_00050504), [left dorsomedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050378), [right T1 leg neuropil](http://virtualflybrain.org/reports/VFB_00050334), [left dorsomedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050368), [right dorsolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050336), [left dorsomedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050370), [left dorsomedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050369), [right dorsolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050340), [left central neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050401), [right dorsolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050337), [left T3 leg neuropil](http://virtualflybrain.org/reports/VFB_00050313), [crepine](http://virtualflybrain.org/reports/VFB_00050310), [right ventrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050307), [right ventrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050297), [right dorsolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050342), [left dorsolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050325), [left T1 leg neuropil](http://virtualflybrain.org/reports/VFB_00050330), [left dorsolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050315), [left ventrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050353), [left dorsolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050321), [right central neuropil of T1](http://virtualflybrain.org/reports/VFB_00050385), [posterior ventromedial cerebrum](http://virtualflybrain.org/reports/VFB_00050331), [left ventrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050352), [left dorsomedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050373), [left dorsomedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050380), [left ventrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050359), [left ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050355), [left centromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050480), [medial lobe of mushroom body](http://virtualflybrain.org/reports/VFB_00050501), [left ventromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050486), [right dorsal neuropil of A9](http://virtualflybrain.org/reports/VFB_00050350), [right dorsolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050348), [left ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050356), [left ventrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050351), [left dorsomedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050367), [posterior inferior protocerebrum](http://virtualflybrain.org/reports/VFB_00050312), [left ventrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050360), [left dorsolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050318), [left ventrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050363), [left ventrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050354), [left dorsolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050324), [right ventrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050296), [right ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050301), [left centrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050282), [left centrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050292), [left dorsolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050326), [left dorsolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050319), [left dorsolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050316), [right ventrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050304), [nodulus - primordial](http://virtualflybrain.org/reports/VFB_00050293), [left centrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050286), [right dorsolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050338), [right dorsolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050345), [right dorsolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050343), [right dorsolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050347), [right dorsolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050335), [left ventrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050358), [left ventrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050364), [left dorsomedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050366), [left ventrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050362), [left dorsolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050320), [right ventrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050308), [right ventrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050306), [right ventrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050305), [right ventrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050303), [posterior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00050329), [left dorsolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050317), [right centrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050262), [right centrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050269), [right centrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050266), [left T2 leg neuropil](http://virtualflybrain.org/reports/VFB_00050506), [left centrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050287), [left centrolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050288), [right centrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050270), [fan-shaped body - primordial](http://virtualflybrain.org/reports/VFB_00050277), [right ventrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050298), [right ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050300), [left centrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050283), [left centrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050278), [left centrolateral neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050281), [left centrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050290), [right dorsolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050339), [right dorsolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050341), [right dorsolateral neuropil of A4](http://virtualflybrain.org/reports/VFB_00050344), [left dorsal neuropil of A9](http://virtualflybrain.org/reports/VFB_00050349), [right dorsolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050346), [left dorsolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050327), [anterior ventromedial cerebrum](http://virtualflybrain.org/reports/VFB_00050332), [ventromedial cerebrum](http://virtualflybrain.org/reports/VFB_00050333), [left centrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050284), [posterior superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00050274), [right centrolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050267), [left ventromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050494), [left centrolateral neuropil of A5](http://virtualflybrain.org/reports/VFB_00050289), [left dorsomedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050294), [left central neuropil of A9](http://virtualflybrain.org/reports/VFB_00050508), [superior intermediate protocerebrum](http://virtualflybrain.org/reports/VFB_00050257), [mushroom body](http://virtualflybrain.org/reports/VFB_00050505), [anterior superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00050275), [right centrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050263), [right centrolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050268), [right centrolateral neuropil of A6](http://virtualflybrain.org/reports/VFB_00050271), [right centrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050265), [left central neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050498), [pedunculus of mushroom body](http://virtualflybrain.org/reports/VFB_00050500), [right centrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050261), [right centrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050273), [right centrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050272), [right centrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050264), [left centrolateral neuropil of A7](http://virtualflybrain.org/reports/VFB_00050291), [left dorsolateral neuropil of A3](http://virtualflybrain.org/reports/VFB_00050323), [right ventrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050295), [vertical lobe of mushroom body](http://virtualflybrain.org/reports/VFB_00050503), [left centromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050481), [left ventromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050492), [left dorsolateral neuropil of A2](http://virtualflybrain.org/reports/VFB_00050322), [lateral accessory lobe](http://virtualflybrain.org/reports/VFB_00050314), [right ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050299), [right ventrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050302), [right T3 leg neuropil](http://virtualflybrain.org/reports/VFB_00050311), [right ventrolateral neuropil of A8](http://virtualflybrain.org/reports/VFB_00050309), [right centromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050445), [calyx of mushroom body](http://virtualflybrain.org/reports/VFB_00050502), [left ventromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050483), [left ventromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050484), [left centromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050476), [left centromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050482), [left centromedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050472), [right centromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050466), [right ventromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050450), [antennal lobe](http://virtualflybrain.org/reports/VFB_00050465), [superior lateral protocerebrum](http://virtualflybrain.org/reports/VFB_00050464), [right ventromedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050463), [right ventromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050461), [right ventromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050457), [left ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050487), [left ventromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050493), [left ventromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050495), [right ventromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050459), [right ventromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050460), [right ventromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050451), [right ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050455), [lateral appendix of mushroom body](http://virtualflybrain.org/reports/VFB_00050507), [left centrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050279), [left ventrolateral neuropil of T3](http://virtualflybrain.org/reports/VFB_00050489), [left ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050488), [right centrolateral neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050260), [left ventromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050490), [left centromedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050479), [left centrolateral neuropil of A1](http://virtualflybrain.org/reports/VFB_00050285), [right dorsomedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050414), [right centromedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050440), [left central neuropil of A6](http://virtualflybrain.org/reports/VFB_00050410), [left central neuropil of A7](http://virtualflybrain.org/reports/VFB_00050411), [right dorsomedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050413), [left centromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050477), [right centromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050444), [right centromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050447), [left centromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050468), [left centromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050475), [right ventromedial subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050449), [left centromedial neuropil of A4](http://virtualflybrain.org/reports/VFB_00050478), [left centromedial neuropil of mandibular segment](http://virtualflybrain.org/reports/VFB_00050469), [left centromedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050474), [clamp](http://virtualflybrain.org/reports/VFB_00050433), [right ventromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050452), [right centromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050436), [right ventrolateral neuropil of T2](http://virtualflybrain.org/reports/VFB_00050454), [right centromedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050446), [right ventrolateral neuropil of T1](http://virtualflybrain.org/reports/VFB_00050453), [right ventromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050456), [left centromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050467), [right dorsomedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050421), [right dorsomedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050422), [right centromedial neuropil of A1](http://virtualflybrain.org/reports/VFB_00050441), [left ventromedial neuropil of A2](http://virtualflybrain.org/reports/VFB_00050491), [left ventromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050496), [right dorsomedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050258), [right ventromedial neuropil of A3](http://virtualflybrain.org/reports/VFB_00050458), [right centrolateral subdivision of ventral nerve cord](http://virtualflybrain.org/reports/VFB_00050259), [left centrolateral neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050280), [superior medial protocerebrum](http://virtualflybrain.org/reports/VFB_00050276), [left centromedial neuropil of labial segment](http://virtualflybrain.org/reports/VFB_00050471), [right ventromedial neuropil of A7](http://virtualflybrain.org/reports/VFB_00050462), [left centromedial neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050470), [left central neuropil of A2](http://virtualflybrain.org/reports/VFB_00050406), [left central neuropil of maxillary segment](http://virtualflybrain.org/reports/VFB_00050400), [right dorsomedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050417), [left centromedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050473), [right ventromedial neuropil of tritocerebrum](http://virtualflybrain.org/reports/VFB_00050431), [right central neuropil of T2](http://virtualflybrain.org/reports/VFB_00050386), [right central neuropil of A1](http://virtualflybrain.org/reports/VFB_00050388), [right central neuropil of A5](http://virtualflybrain.org/reports/VFB_00050392), [anterior optic tubercle primordial](http://virtualflybrain.org/reports/VFB_00050430), [right centromedial neuropil of T1](http://virtualflybrain.org/reports/VFB_00050438), [right dorsomedial neuropil of A5](http://virtualflybrain.org/reports/VFB_00050424), [right dorsomedial neuropil of A6](http://virtualflybrain.org/reports/VFB_00050425), [right dorsomedial neuropil of A8](http://virtualflybrain.org/reports/VFB_00050427), [right dorsomedial neuropil of T3](http://virtualflybrain.org/reports/VFB_00050419), [right dorsomedial neuropil of T2](http://virtualflybrain.org/reports/VFB_00050418) + +
+ +## Adult EM connectome templates + +### JRC_FlyEM_Hemibrain +JRC_FlyEM_Hemibrain template thumbnail + +The JRC_FlyEM_Hemibrain EM volume — a dense reconstruction of a portion of an adult female brain ([Scheffer et al., 2020](http://flybase.org/reports/FBrf0246888)). Its painted domains are the neuprint ROI parcellation used by the hemibrain connectome. [View on VFB](http://virtualflybrain.org/reports/VFB_00101384). + +
+Painted domains (97) + +[PB(R3)](http://virtualflybrain.org/reports/VFB_00101491), [GOR(L)](http://virtualflybrain.org/reports/VFB_00101528), [BU(L)](http://virtualflybrain.org/reports/VFB_00101524), [LAL(L)](http://virtualflybrain.org/reports/VFB_00101526), [ATL(L)](http://virtualflybrain.org/reports/VFB_00101487), [GF(R)](http://virtualflybrain.org/reports/VFB_00101488), [PB(R1)](http://virtualflybrain.org/reports/VFB_00101489), [PB(R2)](http://virtualflybrain.org/reports/VFB_00101490), [VES(L)](http://virtualflybrain.org/reports/VFB_00101535), [NO1(R)](http://virtualflybrain.org/reports/VFB_00101543), [mALT(L)](http://virtualflybrain.org/reports/VFB_00101538), [CA(L)](http://virtualflybrain.org/reports/VFB_00101533), [PB(L6)](http://virtualflybrain.org/reports/VFB_00101503), [NO3(L)](http://virtualflybrain.org/reports/VFB_00101554), [PB(L8)](http://virtualflybrain.org/reports/VFB_00101505), [PB(L7)](http://virtualflybrain.org/reports/VFB_00101504), [SMP(L)](http://virtualflybrain.org/reports/VFB_00101507), [PB(L9)](http://virtualflybrain.org/reports/VFB_00101506), [gL(L)](http://virtualflybrain.org/reports/VFB_00101509), [SIP(L)](http://virtualflybrain.org/reports/VFB_00101508), [b\'L(L)](http://virtualflybrain.org/reports/VFB_00101511), [bL(L)](http://virtualflybrain.org/reports/VFB_00101510), [PB(R5)](http://virtualflybrain.org/reports/VFB_00101493), [CRE(L)](http://virtualflybrain.org/reports/VFB_00101512), [PB(R4)](http://virtualflybrain.org/reports/VFB_00101492), [PB(R7)](http://virtualflybrain.org/reports/VFB_00101495), [PB(R6)](http://virtualflybrain.org/reports/VFB_00101494), [PB(R8)](http://virtualflybrain.org/reports/VFB_00101496), [PB(L1)](http://virtualflybrain.org/reports/VFB_00101498), [PB(R9)](http://virtualflybrain.org/reports/VFB_00101497), [PB(L3)](http://virtualflybrain.org/reports/VFB_00101500), [PB(L2)](http://virtualflybrain.org/reports/VFB_00101499), [PB(L5)](http://virtualflybrain.org/reports/VFB_00101502), [PB(L4)](http://virtualflybrain.org/reports/VFB_00101501), [SCL(L)](http://virtualflybrain.org/reports/VFB_00101529), [SPS(L)](http://virtualflybrain.org/reports/VFB_00101532), [ICL(L)](http://virtualflybrain.org/reports/VFB_00101530), [RUB(L)](http://virtualflybrain.org/reports/VFB_00101515), [a\'L(L)](http://virtualflybrain.org/reports/VFB_00101514), [aL(L)](http://virtualflybrain.org/reports/VFB_00101513), [NO2(R)](http://virtualflybrain.org/reports/VFB_00101546), [NO3(R)](http://virtualflybrain.org/reports/VFB_00101548), [NO1(L)](http://virtualflybrain.org/reports/VFB_00101550), [NO2(L)](http://virtualflybrain.org/reports/VFB_00101553), [AL(L)](http://virtualflybrain.org/reports/VFB_00101484), [AOT(R)](http://virtualflybrain.org/reports/VFB_00101483), [GA(R)](http://virtualflybrain.org/reports/VFB_00101486), [POC](http://virtualflybrain.org/reports/VFB_00101485), [IPS(R)](http://virtualflybrain.org/reports/VFB_00101455), [SAD](http://virtualflybrain.org/reports/VFB_00101456), [GC](http://virtualflybrain.org/reports/VFB_00101478), [mALT(R)](http://virtualflybrain.org/reports/VFB_00101477), [AL(R)](http://virtualflybrain.org/reports/VFB_00101449), [VES(R)](http://virtualflybrain.org/reports/VFB_00101450), [SPS(R)](http://virtualflybrain.org/reports/VFB_00101454), [ATL(R)](http://virtualflybrain.org/reports/VFB_00101445), [IB](http://virtualflybrain.org/reports/VFB_00101443), [ICL(R)](http://virtualflybrain.org/reports/VFB_00101442), [GOR(R)](http://virtualflybrain.org/reports/VFB_00101453), [EPA(R)](http://virtualflybrain.org/reports/VFB_00101451), [CAN(R)](http://virtualflybrain.org/reports/VFB_00101459), [PRW](http://virtualflybrain.org/reports/VFB_00101460), [FLA(R)](http://virtualflybrain.org/reports/VFB_00101458), [GNG](http://virtualflybrain.org/reports/VFB_00101468), [CA(R)](http://virtualflybrain.org/reports/VFB_00101389), [LOP(R)](http://virtualflybrain.org/reports/VFB_00101388), [PED(R)](http://virtualflybrain.org/reports/VFB_00101390), [AMMC](http://virtualflybrain.org/reports/VFB_00101457), [b\'L(R)](http://virtualflybrain.org/reports/VFB_00101396), [LO(R)](http://virtualflybrain.org/reports/VFB_00101387), [ME(R)](http://virtualflybrain.org/reports/VFB_00101385), [AME(R)](http://virtualflybrain.org/reports/VFB_00101386), [a\'L(R)](http://virtualflybrain.org/reports/VFB_00101393), [aL(R)](http://virtualflybrain.org/reports/VFB_00101391), [bL(R)](http://virtualflybrain.org/reports/VFB_00101395), [RUB(R)](http://virtualflybrain.org/reports/VFB_00101440), [SCL(R)](http://virtualflybrain.org/reports/VFB_00101441), [SMP(R)](http://virtualflybrain.org/reports/VFB_00101437), [CRE(R)](http://virtualflybrain.org/reports/VFB_00101438), [ROB(R)](http://virtualflybrain.org/reports/VFB_00101439), [WED(R)](http://virtualflybrain.org/reports/VFB_00101419), [SLP(R)](http://virtualflybrain.org/reports/VFB_00101435), [LH(R)](http://virtualflybrain.org/reports/VFB_00101434), [SIP(R)](http://virtualflybrain.org/reports/VFB_00101436), [PVLP(R)](http://virtualflybrain.org/reports/VFB_00101416), [AVLP(R)](http://virtualflybrain.org/reports/VFB_00101408), [PLP(R)](http://virtualflybrain.org/reports/VFB_00101417), [AOTU(R)](http://virtualflybrain.org/reports/VFB_00101407), [PB](http://virtualflybrain.org/reports/VFB_00101401), [LAL(R)](http://virtualflybrain.org/reports/VFB_00101403), [FB](http://virtualflybrain.org/reports/VFB_00101398), [BU(R)](http://virtualflybrain.org/reports/VFB_00101402), [EB](http://virtualflybrain.org/reports/VFB_00101400), [gL(R)](http://virtualflybrain.org/reports/VFB_00101397), [AB(R)](http://virtualflybrain.org/reports/VFB_00101399), [AB(L)](http://virtualflybrain.org/reports/VFB_00102288), [EPA(L)](http://virtualflybrain.org/reports/VFB_00102287) + +
+ +## Other templates + +VFB also hosts non-CNS adult templates: the [adult head (McKellar et al., 2020)](http://virtualflybrain.org/reports/VFB_00110000) and the [adult T1 leg (Kuan et al., 2020)](http://virtualflybrain.org/reports/VFB_00120000). From 190784949772c6f94409e35e8c1ff3f0e3409475 Mon Sep 17 00:00:00 2001 From: Clare72 Date: Tue, 11 Aug 2026 16:32:37 +0100 Subject: [PATCH 5/5] edit roi nesting info --- .../en/docs/Data/EM/region-connectivity.md | 29 +++++++++++++++---- 1 file changed, 24 insertions(+), 5 deletions(-) diff --git a/content/en/docs/Data/EM/region-connectivity.md b/content/en/docs/Data/EM/region-connectivity.md index dea1b1d..c3e15ac 100644 --- a/content/en/docs/Data/EM/region-connectivity.md +++ b/content/en/docs/Data/EM/region-connectivity.md @@ -27,11 +27,30 @@ neuron's synapse counts in each region as edges from the neuron to the correspon side-specific (`part_of` a body side), left/right is carried by the target region and does not need to be stored on the edge. -Only regions that resolve to a loaded region individual are included. A dataset's -higher-level grouping ROIs (neuprint super-ROIs such as `SNP(R)` or `INP`), the -fine-grained optic-lobe columns, and FlyWire's unassigned bucket (`UNASGD`) are **not** -emitted as regional-connectivity edges, because their synapses are already counted at the -parent neuropil they belong to (counting both would double-count). +A neuron gets an edge for **every** region that resolves to a loaded region +individual. ROIs with no loaded individual are dropped — e.g. the fine-grained +optic-lobe columns (thousands of `ME/LO/LOP` columns that have no individual), +FlyWire's unassigned bucket (`UNASGD`), and neuprint's `NotPrimary` pseudo-ROI — +and are flagged in the build's ROI-mapping report. + +### Counts are multi-level (nested), not a single partition + +The region individuals VFB loads span **several nesting levels** — coarse grouping +neuropils (e.g. `SNP`, `INP`, `CX`), the primary neuropils within them (e.g. +`SLP`, `SIP`, `AL`), and finer subdivisions (antennal-lobe glomeruli, +mushroom-body lobe slices, fan-shaped-body layers, ellipsoid-body domains). A +region-connectivity edge is emitted at **every** level that has a loaded +individual, and the counts are **nested**: a synapse is counted at its finest +region **and** at each of its ancestors, so a parent region's count equals the +sum of its children (for example `AL(R)`'s `upstream` equals the sum over its +glomeruli). This mirrors how the source data (neuprint's `roiInfo`) reports +counts at every level of the ROI hierarchy. + +This makes the tallies **multi-resolution rather than a sum-safe partition**: they +are correct *per region* at whichever granularity you query, but **summing across +nested regions double-counts** the shared synapses. Consumers that need a +non-overlapping total should pick a single level (e.g. the primary neuropils) +rather than adding a parent and its children together. ## Representation