Issues

• DBS and INDEL colors don't exactly match COSMIC

  enhancement
  campbio/BAGEL#64 · Filter by author achevali opened on Sep 27, 2020
  

• Add real data examples to vignette

  documentationquality
  campbio/BAGEL#57 · Filter by author achevali opened on Sep 8, 2020
  

• Example dataset

  quality
  campbio/BAGEL#50 · Filter by author joshua-d-campbell opened on Aug 28, 2020
  

• loading of BSgenome and TxDb packages

  quality
  campbio/BAGEL#49 · Filter by author joshua-d-campbell opened on Aug 28, 2020
  

• helper functions format

  quality
  campbio/BAGEL#48 · Filter by author joshua-d-campbell opened on Aug 28, 2020
  

• Signature order in plots

  bug
  campbio/BAGEL#47 · Filter by author joshua-d-campbell opened on Aug 28, 2020
  

• Rainfall plot of mutations along the genome

  enhancement
  campbio/BAGEL#40 · Filter by author achevali opened on Aug 12, 2020
  

• Deal with mismatch in sample annotation and counts table occurring

  bug
  campbio/BAGEL#39 · Filter by author achevali opened on Aug 11, 2020
  

• Decide what to do about 0 count samples in a result table

  question
  campbio/BAGEL#38 · Filter by author achevali opened on Aug 10, 2020

• Plot Grid Recon Error

  enhancement
  campbio/BAGEL#33 · Filter by author achevali opened on Jun 5, 2020
  

• Parallelize generate_result_grid

  enhancement
  campbio/BAGEL#17 · Filter by author achevali opened on Jan 16, 2020
  

• Genome check

  enhancement
  campbio/BAGEL#2 · Filter by author joshua-d-campbell opened on Dec 2, 2019