setup.py

import os, sys
from pathlib import Path
HERE = Path(os.path.realpath(__file__)).parent
# Prepend dev/src so `from metasmith.constants import ...` resolves to the
# tree being built, not a stale install reachable via PYTHONPATH or env
# site-packages. Order-preserving dedup: the previous set()-based form
# silently shuffled priority, letting stale installs win and baking the
# wrong VERSION into wheels.
_src = str(HERE.joinpath("src"))
sys.path = [_src] + [p for p in sys.path if p != _src]
import setuptools
from metasmith.constants import USER, NAME, VERSION, FULL_VERSION, SHORT_SUMMARY, ENTRY_POINTS, GIT_URL

with open("README.md", "r", encoding="utf-8") as fh:
    long_description = fh.read()

if __name__ == "__main__":
    setuptools.setup(
        name=NAME,
        version=FULL_VERSION,
        author="Tony Liu, Ryan McLaughlin, Anika Nag, Aditi Nagaraj, and Steven J. Hallam",
        author_email="shallam@mail.ubc.ca",
        description=SHORT_SUMMARY,
        long_description=long_description,
        long_description_content_type="text/markdown",
        license_files = ('LICENSE',),
        url=f"{GIT_URL}",
        project_urls={
            "Bug Tracker": f"{GIT_URL}/issues",
        },
        classifiers=[
            "Programming Language :: Python :: 3.12",
            "Operating System :: POSIX :: Linux",
        ],
        package_dir={"": "src"},
        packages=setuptools.find_packages(where="src"),
        package_data={
            "":[ # "" is all packages
                "version.txt",
                "build_hash.txt",
                "nextflow_config/**",
                "bin/**",
                "example_resources/**",
                "jupyter_lab/**",
                # built by `dev.sh --build-gui`, not committed; the wheel and
                # container builds refuse to proceed without it
                "gui/static/**",
                # the page's own artwork -- committed, unlike gui/static/
                "gui/icon/**",
                # the compiled std transform + container libraries, generated by
                # main/transforms/std/create.py. Pure data: no module in here, so
                # find_packages cannot see it and nothing but this line ships it.
                "std/**",
                # the msm_solver binaries, one per platform, built by
                # `dev.sh -be` and never committed. Unlike msm_relay -- which
                # runs on the agent host and is baked into the docker image --
                # the solver runs locally at plan time, so it has to be inside
                # the wheel and the conda package. Absent is a supported state:
                # metasmith then plans on the python solver.
                "engine/**",
            ],
            # examples
            # "package-name": ["*.txt"],
            # "test_package": ["res/*.txt"],
        },
        entry_points={
            'console_scripts': ENTRY_POINTS,
        },
        python_requires=">=3.12",
        install_requires=[],
    )