Issues

• Upcoming Ensembl API and data access changes

  jorainer/ensembldb#166 · Filter by author guidohooiveld opened on Dec 3, 2025
  2

• Genome to protein does not work

  jorainer/ensembldb#164 · Filter by author tprodanov opened on Aug 28, 2025
  1

• keepStandardChromosomes does not work on EnsDb objects

  jorainer/ensembldb#163 · Filter by author mschubert opened on Jul 28, 2025
  1

• Genome to transcript does not give correct transcript position number

  jorainer/ensembldb#161 · Filter by author vetmohit89 opened on Nov 26, 2024
  1

• Compatibility between EnsDb objects and BSgenome objects

  jorainer/ensembldb#159 · Filter by author mschubert opened on Aug 14, 2024
  3

• AnnotationHub EnsDb object for GRCh37?

  jorainer/ensembldb#158 · Filter by author mschubert opened on Aug 14, 2024
  1

• missing data in human EnsDb v112?

  jorainer/ensembldb#155 · Filter by author guidohooiveld opened on Jun 14, 2024
  14

• Trying to install ensembldb in Rstudio 3.6.3

  jorainer/ensembldb#153 · Filter by author noodlebasket1 opened on May 11, 2024
  2

• Can we use ensembldb to convert transcriptomic bam to genomic bam?

  jorainer/ensembldb#152 · Filter by author smk5g5 opened on Mar 29, 2024
  1

• AminoAcid to Genome Coordinates

  jorainer/ensembldb#151 · Filter by author chhorstmann opened on Mar 13, 2024
  1

• Error getting gene regions from Homo.sapiens

  jorainer/ensembldb#146 · Filter by author lmckinno opened on Apr 13, 2023
  3

• org.Ss.eg.db or Atlantic salmon database?

  jorainer/ensembldb#144 · Filter by author marwa38 opened on Dec 9, 2022
  1

• replace disjointExons by exonicParts

  jorainer/ensembldb#142 · Filter by author jorainer opened on Nov 8, 2022

• Retrieving older annotations while matching API version

  jorainer/ensembldb#139 · Filter by author rcastelo opened on Jul 22, 2022
  14

• genomeToProtein doesn't match protein if input CDS range contains a stop codon

  jorainer/ensembldb#137 · Filter by author kotliary opened on Jun 14, 2022
  4

• ensembldb and dplyr: filter, select

  jorainer/ensembldb#135 · Filter by author Shicheng-Guo opened on May 6, 2022
  7

• Unable to retrieve sequence lengths from Ensembl

  jorainer/ensembldb#134 · Filter by author tomthun opened on May 3, 2022
  1

• Argument "-P" isn't numeric

  jorainer/ensembldb#129 · Filter by author guidohooiveld opened on Jan 11, 2022
  2

• Warning: Columns 'name', 'value' are not present in the database and have been removed

  jorainer/ensembldb#128 · Filter by author lgatto opened on Jan 7, 2022
  6

• Add parameter to ensure mapping is only performed on canonical transcript

  jorainer/ensembldb#125 · Filter by author jorainer opened on Dec 21, 2021
  1

• Installing error on Mac

  jorainer/ensembldb#124 · Filter by author Pedramto89 opened on Dec 13, 2021
  10

• Coordinate retrieval errors on peptide belonging to multiple transcripts

  jorainer/ensembldb#123 · Filter by author manogenome opened on Nov 26, 2021
  13

• function to retrieve chr_pos_ref_alt by rs ID?

  jorainer/ensembldb#116 · Filter by author Shicheng-Guo opened on May 2, 2021
  1

• Cant retrieve reference information

  jorainer/ensembldb#110 · Filter by author danielcgingerich opened on Nov 19, 2020
  1

• using EnsDb on sqlite file crash further RMariaDB connections

  jorainer/ensembldb#107 · Filter by author kforner opened on Jul 24, 2020
  3