python-app.yml

# This workflow will install Python dependencies, and run tests from the Odemis repository.
# It uses the python 3 system interpreter to run test cases.

name: Unit testing

on:
  [push, pull_request]
jobs:
  build:

    runs-on: ubuntu-20.04

    steps:
    - uses: actions/checkout@v2
    - name: Install Odemis dependencies
      run: |
        sudo add-apt-repository ppa:delmic-soft/odemis
        sudo apt-get -y update

        sudo apt-get -y install python3-pil python3-yaml python3-serial python3-zmq \
        python3-scipy python3-decorator \
        python3-libtiff python3-comedilib python3-h5py libtiff5-dev python3-future \
        python3-pkg-resources python3-netifaces python3-cairo python3-numpy python3-scipy \
        python3-decorator python3-xdg python3-suds python3-matplotlib python3-opencv \
        python3-wxgtk4.0 python3-serial python3-evdev python3-notify2 python3-psutil \
        graphicsmagick cgroup-tools authbind python3-setuptools cython python3-pyro4-delmic

        sudo mkdir /var/run/odemisd
        sudo chmod a+rw /var/run/odemisd

    - name: Run tests from odemis.dataio
      run: |
        export PYTHONPATH="$PWD/src:$PYTHONPATH"
        python3 -m unittest discover -s src/odemis/dataio/test -p "*_test.py" --verbose

    - name: Run tests from odemis.acq.drift
      run: |
        export PYTHONPATH="$PWD/src:$PYTHONPATH"
        python3 -m unittest discover -s src/odemis/acq/drift/test -p "*_test.py" --verbose