Issues

• Change miaverse to OMA

  microbiome/OMA#895 · Filter by author TuomasBorman opened on Sep 23, 2026
  1

• Rendering fails

  microbiome/OMA#894 · Filter by author TuomasBorman opened on Sep 22, 2026

• Add HuMMANet

  microbiome/OMA#879 · Filter by author TuomasBorman opened on Aug 27, 2026

• Node.js 20 is deprecated

  microbiome/OMA#873 · Filter by author artur-sannikov opened on Jul 29, 2026

• Failing bioc build

  microbiome/OMA#869 · Filter by author 0xMuluh opened on Jul 9, 2026
  3

• Bioc book instructions

  microbiome/OMA#867 · Filter by author antagomir opened on Jul 8, 2026

• PERMANOVA final output table

  microbiome/OMA#863 · Filter by author artur-sannikov opened on Jun 11, 2026

• Data-leakage in ML examples

  G2: AI
  microbiome/OMA#861 · Filter by author raivo-otus opened on Jun 8, 2026

• Clarification for ML data preprocessing

  G2: AI
  microbiome/OMA#860 · Filter by author raivo-otus opened on Jun 8, 2026

• Some code is too complex

  microbiome/OMA#859 · Filter by author RiboRings opened on Jun 2, 2026

• Two book versions now

  microbiome/OMA#856 · Filter by author antagomir opened on May 12, 2026
  6

  

• Use of r2u Docker images to speed up image building

  microbiome/OMA#845 · Filter by author artur-sannikov opened on Feb 25, 2026
  1

• bump OSCA URL

  microbiome/OMA#842 · Filter by author 0xMuluh opened on Jan 31, 2026
  2

• GitHub Actions failure

  microbiome/OMA#828 · Filter by author artur-sannikov opened on Jan 14, 2026
  4

• addMDS drops smallest sample when sample = min(colSums(assay(tse, "counts")))

  microbiome/OMA#824 · Filter by author 0xMuluh opened on Nov 23, 2025
  

• Improve rarefaction docs: move explanation earlier & show niter usage for alpha/beta diversity

  documentationenhancementG4: adoptiongood first issue
  microbiome/OMA#823 · Filter by author 0xMuluh opened on Nov 23, 2025

• Confusion/Error on filtering out zero-variance features

  microbiome/OMA#822 · Filter by author raivo-otus opened on Nov 6, 2025

• Clarification for IntegratedLearner preprocessing

  G2: AI
  microbiome/OMA#817 · Filter by author 0xMuluh opened on Sep 30, 2025

• Citations to open data resources

  microbiome/OMA#816 · Filter by author raivo-otus opened on Sep 30, 2025
  1

• Association chapter

  microbiome/OMA#815 · Filter by author antagomir opened on Sep 23, 2025

• Chapter 18 overlap with network chapters

  microbiome/OMA#814 · Filter by author antagomir opened on Sep 23, 2025
  3

• Swap between altExps

  microbiome/OMA#811 · Filter by author RiboRings opened on Sep 18, 2025

• mikropml update

  G2: AI
  microbiome/OMA#803 · Filter by author TuomasBorman opened on Sep 11, 2025
  12

• Referring packages

  microbiome/OMA#798 · Filter by author TuomasBorman opened on Sep 8, 2025
  1

• Docker - GenomeInfoDb

  microbiome/OMA#790 · Filter by author artur-sannikov opened on Aug 21, 2025