diff --git a/R/convert_output.R b/R/convert_output.R
index 54573788..62fed9e0 100644
--- a/R/convert_output.R
+++ b/R/convert_output.R
@@ -70,7 +70,6 @@ convert_output <- function(
     birthseas = NA,
     initial = NA,
     estimate = NA,
-    # units = NA,
     uncertainty = NA,
     uncertainty_label = NA,
     likelihood = NA,
@@ -169,6 +168,7 @@ convert_output <- function(
 
 
   #### SS3 ####
+  # SS3 groupings: https://docs.google.com/spreadsheets/d/11-k0xOo3Bit1MbJf2ZjmymzsUNCRhgGkVfXV1jNEdbM/edit?gid=0#gid=0
   # Convert SS3 output Report.sso file
   if (tolower(model) == "ss3") {
     if (is.character(file)) {
@@ -348,9 +348,6 @@ convert_output <- function(
       info <- c()
     }
 
-    # Extract units
-
-
     # Loop for all identified parameters to extract for plotting and use
     # Create list of parameters that were not found in the output file
     # 1,4,10,17,19,20,22,32,37
diff --git a/README.md b/README.md
index 131284bb..c2e64414 100644
--- a/README.md
+++ b/README.md
@@ -10,20 +10,11 @@
 
 ***Previously named 'satf'***
 
-The goal of {stockplotr} is to create a centralized package that contains all of
-the figures and tables for a stock assessment report used to inform management. 
-There are multiple current packages that perform a 
-similar function, but they are typically region and/or model dependent. Across 
-the US, there are multiple packages that create plots that are directly used in 
-a stock assessment report used for management. For example, an analyst that uses 
-Stock Synthesis (SS3) to assess a stock will utilize [`r4ss`](https://github.com/r4ss/r4ss/), 
-a package that reads outputs, plots key parameters, and more to increase 
-throughput and reduce tedious tasks for an analyst.
-
-Please note that this package is still in development. As such, some functions 
-are unstable and might not perform as intended. We encourage anyone who tests 
-out this package to leave an [issue](https://github.com/nmfs-ost/stockplotr/issues)
-for any errors you find or for a feature request.
+The goal of {stockplotr} is to create a centralized package that contains all of the figures and tables for a stock assessment report used to inform management. 
+There are multiple current packages that perform a similar function, but they are typically region and/or model dependent. Across the US, there are multiple packages that create plots that are directly used in 
+a stock assessment report used for management. For example, an analyst that uses Stock Synthesis (SS3) to assess a stock will utilize [`r4ss`](https://github.com/r4ss/r4ss/), a package that reads outputs, plots key parameters, and more to increase throughput and reduce tedious tasks for an analyst.
+
+Please note that this package is still in development. As such, some functions are unstable and might not perform as intended. We encourage anyone who tests out this package to leave an [issue](https://github.com/nmfs-ost/stockplotr/issues) for any errors you find or for a feature request.
 
 ## Installation
 
@@ -93,10 +84,7 @@ All contributors participating and contributing to the asar project are expected
 
 ## User Community
 
-We hope that this package will be able to be a one stop shop for plots regarding 
-interpreting assessment models and presenting the results to managers and relevant 
-stakeholders. We encourage interested users to contribute to this package using 
-their custom code when they find it may be useful across the nation.
+We hope that this package will be able to be a one stop shop for plots regarding interpreting assessment models and presenting the results to managers and relevant stakeholders. We encourage interested users to contribute to this package using their custom code when they find it may be useful across the nation.
 
 > [!NOTE]
 > Model diagnostic plots within the [{Fisheries Integrated Modelling System (FIMS)}] (https://github.com/NOAA-FIMS/FIMS) are in development.
diff --git a/data/example_data.rda b/data/example_data.rda
index e2ce34f2..957fdf9d 100644
Binary files a/data/example_data.rda and b/data/example_data.rda differ
diff --git a/inst/resources/bam_var_names.csv b/inst/resources/bam_var_names.csv
index 1a83af6d..a566042f 100644
--- a/inst/resources/bam_var_names.csv
+++ b/inst/resources/bam_var_names.csv
@@ -1,320 +1,320 @@
-module_name,label,alt_label
-parms,styr,start_year
-parms,endyr,end_year
-parms,styrR,recruitment_start_year
-parms,M.constant,natural_mortality
-parm.cons,Linf,
-parms,Linf,
-parm.cons,K,K
-parms,K,K
-parms,t,
-parms,wgt.a,a_weight_length
-parms,wgt.b,b_weight_length
-parms,fec.a,x_fecundity
-parms,fec.b,y_fecundity
-parms,fec.batches,fec_batches
-parms,fec.scale,fec_scale
-parms,spawn.time,spawning_time
-parms,D.mort,discard_mortality
-parms,D.mort.lines,discard_mortality
-parms,D.mort.HBlines,discard_mortality
-parms,D.mort.GRlines,discard_mortality
-,D.mort.cP,discard_mortality
-parms,q,catchability
-t.series,q,catchability
-parm.cons,q.rate,catchability_rate
-parms,q.rate,catchability_rate
-parms,q.beta,catchability_beta
-parms,q.DD.B0.4plus,q_DD_B0_4plus
-parms,f.prop.d,f_prop_d
-parms,F.prop,proportion_fishing_mortality
-parms,F.prop.comm.D,proportion_fishing_mortality
-parms,F.prop.hb.D,proportion_fishing_mortality
-parms,F.prop.mrip.D,proportion_fishing_mortality
-parms,F.init.ratio,inital_fishing_mortality
-parms,Fend.mean,terminal_fishing_mortality
-parms,B,biomass
-t.series,B,biomass
-parms,Bstyr.B,biomass_start_year_biomass
-parms,SSB,spawning_biomass
-t.series,SSB,spawning_biomass
-parms,SSBstyr.SSB,spawning_biomass_start_year_spawning_biomass
-parms,ssbstyr.ssb0,spawning_biomass_start_year_spawning_biomass0
-parms,Rstyr.R,recruitment_start_year_recruitment
-parms,rstyr.r0,recruitment_start_year_R0
-parms,Mean.biascorr,bias_correction
-parms,mean.r0,mean_R0
-parms,Mean.R,recruitment
-parms,Phi,phi
-parms,rec.mu.end,rec_mu_end
-parms,R.sigma.logdevs,R_sigma_logdevs
-parms,R.sigma.par,R_sigma_par
-parms,R.autocorr,recruitment_autocorrelation
-parms,R,recruitment
-parms,R.virgin.bc,recruitment_unfished_bc
-parms,rec.lag,recruitment_lag
-parms,msy.klb,msy_weight
-parms,msy.knum,msy_numbers
-parms,Fmsy,fishing_mortality_msy
-parms,SSBmsy,spawning_biomass_msy
-parms,msst,msst
-parms,Bmsy,biomass_msy
-parms,Rmsy,recruitment_msy
-parms,sprmsy,spr_msy
-parms,Dmsy.knum,discard_msy_numbers
-parms,Dmsy.klb,discard_msy_weight
-parms,Fend.Fmsy,F_F_msy
-parms,Fend.Fmsy.mean,F_F_msy_mean
-parms,SSBend.SSBmsy,spawning_biomass_spawning_biomass_msy
-parms,SSBend.MSST,spawning_biomass_msst
-parms,Fproxy,F_target
-spr.brps,Fproxy,F_target
-parms,SSB.Fproxy,spawning_biomass_F_proxy
-spr.brps,SSB.Fproxy,spawning_biomass_F_proxy
-parms,msst.Fproxy,msst_F_proxy
-spr.brps,msst.Fproxy,msst_F_proxy
-parms,B.Fproxy,biomass_F_proxy
-spr.brps,B.Fproxy,biomass_F_proxy
-parms,R.Fproxy,R_F_proxy
-spr.brps,R.Fproxy,R_F_proxy
-parms,L.Fproxy.knum,landings_F_proxy
-spr.brps,L.Fproxy.knum,landings_F_proxy
-parms,L.Fproxy.klb,landings_F_proxy
-spr.brps,L.Fproxy.klb,landings_F_proxy
-parms,Dmort,discard_mortality
-parms,Dmort.GR,Dmort_GR
-parms,Dmort.cP,Dmort_cP
-spr.brps,SPR.proxy.level,spr_proxy
-spr.brps,F30,f30
-spr.brps,F40,f40
-spr.brps,F50,f50
-spr.brps,Fend.Fproxy.mean,fishing_mortality_fishing_mortality_proxy
-spr.brps,SSBend.SSBFproxy,spawning_biomass_spawning_biomass_F_proxy
-spr.brps,SSBend.MSSTFproxy,spawning_biomass_msst_F_proxy
-parm.cons,t0,t0
-parm.cons,len_cv_val,
-parm.cons,log_R0,log_recruitment_unfished
-parm.cons,steep,steepness
-parm.cons,rec_sigma,recruitment_sigma
-parm.cons,R_autocorr,recruitment_autocorrelation
-parm.cons,log_dm_lc,
-,log_dm_cP_lc,
-parm.cons,log_dm_D_lc,
-parm.cons,log_dm_Mcvt_ac,
-parm.cons,log_dm_ac,
-,log_dm_cP_ac,
-parm.cons,selpar_D_logit,selectivity_parameter_discard_logit
-parm.cons,selpar_A50,selectivity_parameter_A50
-parm.cons,selpar_slope,selectivity_parameter_slope
-parm.cons,selpar_A502,selectivity_parameter_A50_2
-parm.cons,selpar_slope2,selectivity_parameter_slope_2
-parm.cons,selpar_D_logit,selectivity_parameter_discard_logit
-parm.cons,log_q,log_catchability
-parm.cons,M_constant,natural_mortality
-parm.cons,log_avg_F,
-parm.cons,log_avg_F_cP,
-parm.cons,log_avg_F_cT,
-parm.cons,log_avg_F_D,
-parm.cons,F_init,initial_fishing_mortality
-like,lk.total,lk_total
-like,lk.unwgt.data,lk_unwgt_data
-like,lk.U,lk_U
-like,lk.L,lk_L
-like,lk.D,lk_D
-like,lk.lenc,lk_lenc
-like,lk.lenc.D,lk_lenc_D
-like,lk.agec,lk_agec
-like,lk.agec.Mcvt,lk_agec_Mcvt
-like,lk.priors,lk_priors
-like,lk.U.RW,lk_U_RW
-like,lk.SRfit,lk_SRfit
-like,lk.SRearly,lk_SRearly
-like,lk.SRend,lk_SRend
-like,w.L,landings_weight
-like,w.D,discards_weight
-like,w.lc,w_lc
-like,w.lc.D,w_lc_D
-like,w.ac,w_ac
-like,w.ac.Mcvt,w_ac_Mcvt
-like,w.U,w_U
-like,w.R,w_R
-like,w.R.init,w_R_init
-like,w.R.end,w_R_end
-like,gradient.max,gradient_max
-sel.parms,selpar.D,selectivity_parameter_discard
-sel.parms,selpar.A50.d,selectivity_parameter_A50_discard
-sel.parms,selpar.slope.d,selectivity_parameter_slope_discard
-sel.parms,selpar.A502.d,selectivity_parameter_A50_2_discard
-sel.parms,selpar.slope2.d,selectivity_parameter_slope_2_discard
-parm.tvec,log.rec.dev,log_recruitment_deviations
-parm.tvec.cons,log.rec.dev,log_recruitment_deviations
-parm.tvec,log.F.dev,log_F_deviations
-parm.tvec.cons,log.F.dev,log_F_deviations
-,log.F.dev.cP,log_F_dev_cP
-,log.F.dev.cT,log_F_dev_cT
-parm.tvec,log.F.dev.D,log_F_deviations_discard
-parm.tvec.cons,log.F.dev.D,log_F_deviations_discard
-parm.avec,log.Nage.dev,log_abundance_deviations
-parm.avec.cons,log.Nage.dev,log_abundance_deviations
-N.age,N.age,abundance
-N.age.mdyr,N.age.mdyr,abundance_midyear
-N.age.spawn,N.age.spawn,abundance_spawning
-B.age,B.age,biomass
-F.age,F.age,fishing_mortality
-Z.age,Z.age,total_mortality
-L.age.pred.knum,L.age.pred.knum,landings_predicted_numbers
-L.age.pred.klb,L.age.pred.klb,landings_predicted_weight
-size.age.fishery,len.mm,length
-,len.cP.mm,length
-,len.cT.mm,len_cT_mm
-,len.D.mm,len_D_mm
-a.series,wgt.klb,weight
-,wgt.cP.klb,wgt_cP_klb
-,wgt.cT.klb,wgt_cT_klb
-,wgt.D.klb,wgt_D_klb
-sel.age,sel.v.wgted.L,selectivity_weighted_landing
-sel.age,sel.v.wgted.D,selectivity_weighted_discard
-sel.age,sel.v.wgted.tot,selelectivity_weighted
-sel.age,sel.v,selectivity
-sel.age,sel.v.Mcvt,selectivity_v_Mcvt
-sel.age,sel.m,selectivity
-sel.age,sel.m.D,selectivity_discard
-comp.mats,lcomp.ob,length_composition_expected
-,lcomp.pr,length_composition_predicted
-,lcomp.D.ob,length_composition_discard_observed
-,lcomp.D.pr,length_composition_discard_predicted
-,acomp.ob,age_composition_observed
-,acomp.pr,age_composition_predicted
-,acomp.Mcvt.ob,age_composition_observed
-,acomp.Mcvt.pr,age_composition_predicted
-sdnr,sdnr.U,sdnr_U
-t.series,F.Fmsy,F_F_msy
-t.series,F.full,fishing_mortality_full
-t.series,F,fishing_mortality
-t.series,F.D,fishing_mortality_discards
-t.series,Fsum,total_fishing_mortality
-t.series,N,abundance
-t.series,recruits,recruitment
-t.series,logR.dev,log_recruitment_deviations
-t.series,SSB.SSBmsy,sb_sb_msy
-t.series,SSB.msst,sb_msst
-t.series,SSB.SSBFproxy,sb_sb_Fproxy
-t.series,B.B0,b_b0
-t.series,MatFemB,mature_female_biomass
-t.series,SPR.static,spr
-t.series,total.L.klb,landings_weight
-t.series,total.L.knum,landings_numbers
-t.series,total.D.klb,discards_weight
-t.series,total.D.knum,discards_numbers
-t.series,U.ob,index_observed
-t.series,U.pr,index_predicted
-t.series,cv.U,index_cv
-t.series,q.rate.mult,catchability_rate
-t.series,q.DD.mult,q_DD_mult
-t.series,q.DD.B.4plus,q_DD_B_4plus
-t.series,q.RW.log.dev,q_RW_log_dev
-t.series,L.ob,landings_observed
-t.series,L.pr,landings_predicted
-t.series,cv.L,landings_cv
-t.series,D.ob,discard_observed
-t.series,D.pr,discard_predicted
-t.series,cv.D,discard_cv
-t.series,cl.D.release,cl_D_release
-t.series,cl.Dosed.release,cl_Dosed_release
-t.series,cp.D.release,cp_D_release
-t.series,cp.Dosed.release,cp_Dosed_release
-t.series,hb.D.release,hb_D_release
-t.series,mrip.D.release,mrip_D_release
-t.series,lcomp.n,length_composition
-t.series,lcomp.D.n,length_composition_discards
-t.series,acomp.n,age_composition
-t.series,acomp.Mcvt.n,acomp_Mcvt_n
-t.series,lcomp.nfish,lcomp_nfish
-t.series,lcomp.D.nfish,lcomp_D_nfish
-t.series,acomp.nfish,acomp_nfish
-t.series,acomp.Mcvt.nfish,acomp_Mcvt_nfish
-t.series,lcomp.neff,lcomp_neff
-t.series,lcomp.D.neff,lcomp_D_neff
-t.series,acomp.neff,acomp_neff
-t.series,acomp.Mcvt.neff,acomp_Mcvt_neff
-LD.pr.tseries,L.klb,landings_weight
-LD.pr.tseries,L.knum,landings_numbers
-LD.pr.tseries,D.klb,discard_weight
-LD.pr.tseries,D.knum,discard_numbers
-a.series,length,length
-a.series,length.cv,length_cv
-a.series,length.sd,length_sd
-a.series,weight,weight
-a.series,wgt.mt,wgt_mt
-a.series,wgt.wgted.L.klb,wgt_wgted_L_klb
-a.series,wgt.wgted.D.klb,wgt_wgted_D_klb
-a.series,prop.female,proportion_female
-a.series,mat.female,mature_female
-a.series,fecundity.scaled,fecundity_scaled
-a.series,reprod,reprod
-a.series,reprod.MatFemB,reprod_MatFemB
-a.series,M,natural_mortality
-a.series,F.initial,F_initial
-a.series,Z.initial,Z_initial
-a.series,Nage.eq.init,Nage_eq_init
-a.series,log.Nage2plus.init.dev,log_Nage2plus_plus.init_dev
-eq.series,F.eq,fishing_mortality
-eq.series,spr.eq,spr
-eq.series,R.eq,recruitment
-eq.series,SSB.eq,spawning_biomass
-eq.series,B.eq,biomass
-eq.series,L.eq.klb,landings_weight
-eq.series,D.eq.knum,discard_numbers
-eq.series,D.eq.klb,discard_weight
-pr.series,F.spr,f_spr
-pr.series,spr,spr
-pr.series,SPR,spr
-pr.series,ypr.lb,ypr
-pr.series,total.lb,total_lb
-CLD.est.mats,Lw,Lw
-CLD.est.mats,Lw.total,Lw_total
-CLD.est.mats,Dw,Dw
-CLD.est.mats,Dw.total,Dw_total
-CLD.est.mats,Ln,Ln
-CLD.est.mats,Ln.total,Ln_total
-CLD.est.mats,Dn,Dn
-CLD.est.mats,Dn.total,Dn_total
-age.error,error.mat,error_mat
-proj.t.series,F.proj,fishing_mortality
-proj.t.series,SSB.proj,spawning_biomass
-proj.t.series,B.proj,biomass
-proj.t.series,R.proj,recruitment
-proj.t.series,L.knum.proj,landings_numbers
-proj.t.series,L.klb.proj,landings_weight
-proj.N.age,proj.N.age,abundance
-B.age,b.mdyr.age,biomass_midyear_age
-LD.pr.tseries,l.age.pred.mt,landings_predicted_weight
-LD.pr.tseries,l.mt,landings_weight
-M.age,m.age,natural_mortality
-a.series,mat_male,mature_male
-a.series,prop_male,proportion_male
-comp.mats,acomp.ob,age_composition_observed
-comp.mats,acomp.pr,age_composition_predicted
-comp.mats,lcomp.pr,length_composition_predicted
-parms,F_F_msy,fishing_mortality_fishing_mortality_msy
-parms,F_F_msy_mean,fishing_mortality_fishing_mortality_msy_mean
-parms,b.f30,biomass_f30
-parms,bstyr.b0,biomass_start_tear_b0
-parms,l.f30.knum,landings_f30_numbers
-parms,l.f30.mt,landings_f30_weight
-parms,msy.mt,msy_weight
-parms,ssb.f30,spawning_biomass_f30
-projection,b.proj,biomass
-projection,f.proj,fishing_mortality
-projection,l.knum.proj,landings_numbers
-projection,l.my.proj,landings_weight
-projection,r.proj,recruitment
-projection,ssb.proj,spawning_biomass
-spr.brps,b.f30,biomass_f30
-spr.brps,fend.f30.mean,fishing_mortality_end_fishing_mortality_f30_mean
-spr.brps,l.f30.knum,landings_f30_numbers
-spr.brps,l.f30.mt,landings_f30_weight
-spr.brps,r.f30,recruitment_f30
-spr.brps,ssb.f30,spawning_biomass_f30
-spr.brps,ssbend.ssbf30,spawning_biomass_end_spawning_biomass_f30
-t.series,total.l.mt,landings_weight
+module_name,label,alt_label,unit
+parms,styr,start_year,
+parms,endyr,end_year,
+parms,styrR,recruitment_start_year,
+parms,M.constant,natural_mortality,
+parm.cons,Linf,,cm
+parms,Linf,,cm
+parm.cons,K,K,
+parms,K,K,
+parms,t,,
+parms,wgt.a,a_weight_length,
+parms,wgt.b,b_weight_length,
+parms,fec.a,x_fecundity,
+parms,fec.b,y_fecundity,
+parms,fec.batches,fec_batches,
+parms,fec.scale,fec_scale,
+parms,spawn.time,spawning_time,
+parms,D.mort,discard_mortality,
+parms,D.mort.lines,discard_mortality,
+parms,D.mort.HBlines,discard_mortality,
+parms,D.mort.GRlines,discard_mortality,
+,D.mort.cP,discard_mortality,
+parms,q,catchability,
+t.series,q,catchability,
+parm.cons,q.rate,catchability_rate,
+parms,q.rate,catchability_rate,
+parms,q.beta,catchability_beta,
+parms,q.DD.B0.4plus,q_DD_B0_4plus,
+parms,f.prop.d,f_prop_d,
+parms,F.prop,proportion_fishing_mortality,
+parms,F.prop.comm.D,proportion_fishing_mortality,
+parms,F.prop.hb.D,proportion_fishing_mortality,
+parms,F.prop.mrip.D,proportion_fishing_mortality,
+parms,F.init.ratio,inital_fishing_mortality,
+parms,Fend.mean,terminal_fishing_mortality,
+parms,B,biomass,kg
+t.series,B,biomass,kg
+parms,Bstyr.B,biomass_start_year_biomass,kg
+parms,SSB,spawning_biomass,kg
+t.series,SSB,spawning_biomass,kg
+parms,SSBstyr.SSB,spawning_biomass_start_year_spawning_biomass,
+parms,ssbstyr.ssb0,spawning_biomass_start_year_spawning_biomass0,
+parms,Rstyr.R,recruitment_start_year_recruitment,
+parms,rstyr.r0,recruitment_start_year_R0,
+parms,Mean.biascorr,bias_correction,
+parms,mean.r0,mean_R0,
+parms,Mean.R,recruitment,
+parms,Phi,phi,,
+parms,rec.mu.end,rec_mu_end,
+parms,R.sigma.logdevs,R_sigma_logdevs,
+parms,R.sigma.par,R_sigma_par,
+parms,R.autocorr,recruitment_autocorrelation,
+parms,R,recruitment,
+parms,R.virgin.bc,recruitment_unfished_bc,
+parms,rec.lag,recruitment_lag,
+parms,msy.klb,msy_weight,lb
+parms,msy.knum,msy_numbers,numbers
+parms,Fmsy,fishing_mortality_msy,
+parms,SSBmsy,spawning_biomass_msy,kg
+parms,msst,msst,kg
+parms,Bmsy,biomass_msy,kg
+parms,Rmsy,recruitment_msy,
+parms,sprmsy,spr_msy,
+parms,Dmsy.knum,discard_msy_numbers,numbers
+parms,Dmsy.klb,discard_msy_weight,lb
+parms,Fend.Fmsy,F_F_msy,
+parms,Fend.Fmsy.mean,F_F_msy_mean,
+parms,SSBend.SSBmsy,spawning_biomass_spawning_biomass_msy,
+parms,SSBend.MSST,spawning_biomass_msst,
+parms,Fproxy,F_target,
+spr.brps,Fproxy,F_target,
+parms,SSB.Fproxy,spawning_biomass_F_proxy,kg
+spr.brps,SSB.Fproxy,spawning_biomass_F_proxy,kg
+parms,msst.Fproxy,msst_F_proxy,kg
+spr.brps,msst.Fproxy,msst_F_proxy,kg
+parms,B.Fproxy,biomass_F_proxy,kg
+spr.brps,B.Fproxy,biomass_F_proxy,kg
+parms,R.Fproxy,R_F_proxy,
+spr.brps,R.Fproxy,R_F_proxy,
+parms,L.Fproxy.knum,landings_F_proxy,numbers
+spr.brps,L.Fproxy.knum,landings_F_proxy,numbers
+parms,L.Fproxy.klb,landings_F_proxy,lbs
+spr.brps,L.Fproxy.klb,landings_F_proxy,lbs
+parms,Dmort,discard_mortality,
+parms,Dmort.GR,Dmort_GR,
+parms,Dmort.cP,Dmort_cP,
+spr.brps,SPR.proxy.level,spr_proxy,
+spr.brps,F30,f30,
+spr.brps,F40,f40,
+spr.brps,F50,f50,
+spr.brps,Fend.Fproxy.mean,fishing_mortality_fishing_mortality_proxy,
+spr.brps,SSBend.SSBFproxy,spawning_biomass_spawning_biomass_F_proxy,
+spr.brps,SSBend.MSSTFproxy,spawning_biomass_msst_F_proxy,
+parm.cons,t0,t0,
+parm.cons,len_cv_val,,
+parm.cons,log_R0,log_recruitment_unfished,
+parm.cons,steep,steepness,
+parm.cons,rec_sigma,recruitment_sigma,
+parm.cons,R_autocorr,recruitment_autocorrelation,
+parm.cons,log_dm_lc,,
+,log_dm_cP_lc,,
+parm.cons,log_dm_D_lc,,
+parm.cons,log_dm_Mcvt_ac,,
+parm.cons,log_dm_ac,,
+,log_dm_cP_ac,,
+parm.cons,selpar_D_logit,selectivity_parameter_discard_logit,
+parm.cons,selpar_A50,selectivity_parameter_A50,
+parm.cons,selpar_slope,selectivity_parameter_slope,
+parm.cons,selpar_A502,selectivity_parameter_A50_2,
+parm.cons,selpar_slope2,selectivity_parameter_slope_2,
+parm.cons,selpar_D_logit,selectivity_parameter_discard_logit,
+parm.cons,log_q,log_catchability,
+parm.cons,M_constant,natural_mortality,
+parm.cons,log_avg_F,,
+parm.cons,log_avg_F_cP,,
+parm.cons,log_avg_F_cT,,
+parm.cons,log_avg_F_D,,
+parm.cons,F_init,initial_fishing_mortality,
+like,lk.total,lk_total,
+like,lk.unwgt.data,lk_unwgt_data,
+like,lk.U,lk_U,
+like,lk.L,lk_L,
+like,lk.D,lk_D,
+like,lk.lenc,lk_lenc,
+like,lk.lenc.D,lk_lenc_D,
+like,lk.agec,lk_agec,
+like,lk.agec.Mcvt,lk_agec_Mcvt,
+like,lk.priors,lk_priors,
+like,lk.U.RW,lk_U_RW,
+like,lk.SRfit,lk_SRfit,
+like,lk.SRearly,lk_SRearly,
+like,lk.SRend,lk_SRend,
+like,w.L,landings_weight,kg
+like,w.D,discards_weight,kg
+like,w.lc,w_lc,
+like,w.lc.D,w_lc_D,
+like,w.ac,w_ac,
+like,w.ac.Mcvt,w_ac_Mcvt,
+like,w.U,w_U,
+like,w.R,w_R,
+like,w.R.init,w_R_init,
+like,w.R.end,w_R_end,
+like,gradient.max,gradient_max,
+sel.parms,selpar.D,selectivity_parameter_discard,
+sel.parms,selpar.A50.d,selectivity_parameter_A50_discard,
+sel.parms,selpar.slope.d,selectivity_parameter_slope_discard,kg
+sel.parms,selpar.A502.d,selectivity_parameter_A50_2_discard,kg
+sel.parms,selpar.slope2.d,selectivity_parameter_slope_2_discard,
+parm.tvec,log.rec.dev,log_recruitment_deviations,
+parm.tvec.cons,log.rec.dev,log_recruitment_deviations,
+parm.tvec,log.F.dev,log_F_deviations,
+parm.tvec.cons,log.F.dev,log_F_deviations,
+,log.F.dev.cP,log_F_dev_cP,
+,log.F.dev.cT,log_F_dev_cT,
+parm.tvec,log.F.dev.D,log_F_deviations_discard,
+parm.tvec.cons,log.F.dev.D,log_F_deviations_discard,
+parm.avec,log.Nage.dev,log_abundance_deviations,
+parm.avec.cons,log.Nage.dev,log_abundance_deviations,
+N.age,N.age,abundance,numbers
+N.age.mdyr,N.age.mdyr,abundance_midyear,numbers
+N.age.spawn,N.age.spawn,abundance_spawning,numbers
+B.age,B.age,biomass,kg
+F.age,F.age,fishing_mortality,
+Z.age,Z.age,total_mortality,
+L.age.pred.knum,L.age.pred.knum,landings_predicted_numbers,numbers
+L.age.pred.klb,L.age.pred.klb,landings_predicted_weight,lbs
+size.age.fishery,len.mm,length,mm
+,len.cP.mm,length,mm
+,len.cT.mm,len_cT_mm,mm
+,len.D.mm,len_D_mm,mm
+a.series,wgt.klb,weight,lbs
+,wgt.cP.klb,wgt_cP_klb,lbs
+,wgt.cT.klb,wgt_cT_klb,lbs
+,wgt.D.klb,wgt_D_klb,lbs
+sel.age,sel.v.wgted.L,selectivity_weighted_landing,
+sel.age,sel.v.wgted.D,selectivity_weighted_discard,
+sel.age,sel.v.wgted.tot,selelectivity_weighted,
+sel.age,sel.v,selectivity,
+sel.age,sel.v.Mcvt,selectivity_v_Mcvt,
+sel.age,sel.m,selectivity,
+sel.age,sel.m.D,selectivity_discard,
+comp.mats,lcomp.ob,length_composition_expected,kg
+,lcomp.pr,length_composition_predicted,kg
+,lcomp.D.ob,length_composition_discard_observed,kg
+,lcomp.D.pr,length_composition_discard_predicted,kg
+,acomp.ob,age_composition_observed,kg
+,acomp.pr,age_composition_predicted,kg
+,acomp.Mcvt.ob,age_composition_observed,kg
+,acomp.Mcvt.pr,age_composition_predicted,kg
+sdnr,sdnr.U,sdnr_U,
+t.series,F.Fmsy,F_F_msy,
+t.series,F.full,fishing_mortality_full,
+t.series,F,fishing_mortality,
+t.series,F.D,fishing_mortality_discards,
+t.series,Fsum,total_fishing_mortality,
+t.series,N,abundance,numbers
+t.series,recruits,recruitment,
+t.series,logR.dev,log_recruitment_deviations,
+t.series,SSB.SSBmsy,sb_sb_msy,
+t.series,SSB.msst,sb_msst,kg
+t.series,SSB.SSBFproxy,sb_sb_Fproxy,
+t.series,B.B0,b_b0,
+t.series,MatFemB,mature_female_biomass,kg
+t.series,SPR.static,spr,kg
+t.series,total.L.klb,landings_weight,lbs
+t.series,total.L.knum,landings_numbers,numbers
+t.series,total.D.klb,discards_weight,lbs
+t.series,total.D.knum,discards_numbers,numbers
+t.series,U.ob,index_observed,
+t.series,U.pr,index_predicted,
+t.series,cv.U,index_cv,
+t.series,q.rate.mult,catchability_rate,
+t.series,q.DD.mult,q_DD_mult,
+t.series,q.DD.B.4plus,q_DD_B_4plus,
+t.series,q.RW.log.dev,q_RW_log_dev,
+t.series,L.ob,landings_observed,kg
+t.series,L.pr,landings_predicted,kg
+t.series,cv.L,landings_cv,
+t.series,D.ob,discard_observed,kg
+t.series,D.pr,discard_predicted,kg
+t.series,cv.D,discard_cv,
+t.series,cl.D.release,cl_D_release,
+t.series,cl.Dosed.release,cl_Dosed_release,
+t.series,cp.D.release,cp_D_release,
+t.series,cp.Dosed.release,cp_Dosed_release,
+t.series,hb.D.release,hb_D_release,
+t.series,mrip.D.release,mrip_D_release,
+t.series,lcomp.n,length_composition,
+t.series,lcomp.D.n,length_composition_discards,
+t.series,acomp.n,age_composition,
+t.series,acomp.Mcvt.n,acomp_Mcvt_n,
+t.series,lcomp.nfish,lcomp_nfish,
+t.series,lcomp.D.nfish,lcomp_D_nfish,
+t.series,acomp.nfish,acomp_nfish,
+t.series,acomp.Mcvt.nfish,acomp_Mcvt_nfish,
+t.series,lcomp.neff,lcomp_neff,
+t.series,lcomp.D.neff,lcomp_D_neff,
+t.series,acomp.neff,acomp_neff,
+t.series,acomp.Mcvt.neff,acomp_Mcvt_neff,
+LD.pr.tseries,L.klb,landings_weight,lbs
+LD.pr.tseries,L.knum,landings_numbers,numbers
+LD.pr.tseries,D.klb,discard_weight,lbs
+LD.pr.tseries,D.knum,discard_numbers,numbers
+a.series,length,length,mm
+a.series,length.cv,length_cv,
+a.series,length.sd,length_sd,mm
+a.series,weight,weight,kg
+a.series,wgt.mt,wgt_mt,mt
+a.series,wgt.wgted.L.klb,wgt_wgted_L_klb,lbs
+a.series,wgt.wgted.D.klb,wgt_wgted_D_klb,lbs
+a.series,prop.female,proportion_female,
+a.series,mat.female,mature_female,
+a.series,fecundity.scaled,fecundity_scaled,
+a.series,reprod,reprod,
+a.series,reprod.MatFemB,reprod_MatFemB,
+a.series,M,natural_mortality,
+a.series,F.initial,F_initial,
+a.series,Z.initial,Z_initial,
+a.series,Nage.eq.init,Nage_eq_init,
+a.series,log.Nage2plus.init.dev,log_Nage2plus_plus.init_dev,
+eq.series,F.eq,fishing_mortality,
+eq.series,spr.eq,spr,
+eq.series,R.eq,recruitment,
+eq.series,SSB.eq,spawning_biomass,kg
+eq.series,B.eq,biomass,kg
+eq.series,L.eq.klb,landings_weight,lbs
+eq.series,D.eq.knum,discard_numbers,numbers
+eq.series,D.eq.klb,discard_weight,lbs
+pr.series,F.spr,f_spr,
+pr.series,spr,spr,
+pr.series,SPR,spr,
+pr.series,ypr.lb,ypr,lbs
+pr.series,total.lb,total_lb,lbs
+CLD.est.mats,Lw,Lw,
+CLD.est.mats,Lw.total,Lw_total,
+CLD.est.mats,Dw,Dw,
+CLD.est.mats,Dw.total,Dw_total,
+CLD.est.mats,Ln,Ln,
+CLD.est.mats,Ln.total,Ln_total,
+CLD.est.mats,Dn,Dn,
+CLD.est.mats,Dn.total,Dn_total,
+age.error,error.mat,error_mat,
+proj.t.series,F.proj,fishing_mortality,
+proj.t.series,SSB.proj,spawning_biomass,kg
+proj.t.series,B.proj,biomass,kg
+proj.t.series,R.proj,recruitment,kg
+proj.t.series,L.knum.proj,landings_numbers,numbers
+proj.t.series,L.klb.proj,landings_weight,lbs
+proj.N.age,proj.N.age,abundance,numbers
+B.age,b.mdyr.age,biomass_midyear_age,kg
+LD.pr.tseries,l.age.pred.mt,landings_predicted_weight,mt
+LD.pr.tseries,l.mt,landings_weight,mt
+M.age,m.age,natural_mortality,
+a.series,mat_male,mature_male,
+a.series,prop_male,proportion_male,
+comp.mats,acomp.ob,age_composition_observed,
+comp.mats,acomp.pr,age_composition_predicted,
+comp.mats,lcomp.pr,length_composition_predicted,
+parms,F_F_msy,fishing_mortality_fishing_mortality_msy,
+parms,F_F_msy_mean,fishing_mortality_fishing_mortality_msy_mean,
+parms,b.f30,biomass_f30,kg
+parms,bstyr.b0,biomass_start_tear_b0,
+parms,l.f30.knum,landings_f30_numbers,numbers
+parms,l.f30.mt,landings_f30_weight,mt
+parms,msy.mt,msy_weight,mt
+parms,ssb.f30,spawning_biomass_f30,kg
+projection,b.proj,biomass,kg
+projection,f.proj,fishing_mortality,
+projection,l.knum.proj,landings_numbers,numbers
+projection,l.my.proj,landings_weight,lbs
+projection,r.proj,recruitment,
+projection,ssb.proj,spawning_biomass,kg
+spr.brps,b.f30,biomass_f30,kg
+spr.brps,fend.f30.mean,fishing_mortality_end_fishing_mortality_f30_mean,
+spr.brps,l.f30.knum,landings_f30,numbers
+spr.brps,l.f30.mt,landings_f30,mt
+spr.brps,r.f30,recruitment_f30,
+spr.brps,ssb.f30,spawning_biomass_f30,kg
+spr.brps,ssbend.ssbf30,spawning_biomass_end_spawning_biomass_f30,
+t.series,total.l.mt,landings_weight,mt
diff --git a/inst/resources/rceattle_var_names.csv b/inst/resources/rceattle_var_names.csv
index 063cfbb1..bc31703a 100644
--- a/inst/resources/rceattle_var_names.csv
+++ b/inst/resources/rceattle_var_names.csv
@@ -1,202 +1,202 @@
-module_name,label,alt_label
-initial_params,ln_finit,
-initial_params,ln_flimit,ln_fishing_mortality_limit
-initial_params,ln_ftarget,ln_fishing_mortality_target
-initial_params,ln_m1,
-initial_params,ln_m1_dev,
-initial_params,ln_pop_scalar,
-initial_params,ln_sel_slp,
-initial_params,ln_sel_slp_dev,
-initial_params,log_gam_a,
-initial_params,log_gam_b,
-initial_params,log_phi,
-initial_params,m1_beta,
-initial_params,m1_dev_ln_sd,
-initial_params,m1_rho,
-initial_params,proj_f_prop,
-initial_params,r0,
-initial_params,r_ln_sd,
-initial_params,rec_dev,recruitment_deviations
-initial_params,sel_coff,
-initial_params,sel_coff_dev,
-initial_params,sel_curve_pen,
-initial_params,sel_curve_pen,
-initial_params,sel_dev_ln_sd,
-initial_params,sel_inf,
-initial_params,sel_inf_dev,
-map,1,
-map,2,
-map,3,
-map,alpha,
-map,beta,
-map,beta_rec_pars,
-map,catch_ln_sd,ln_catch_sd
-map,comp_weights,composition_weights
-map,diet_comp_weights,diet_composition_weights
-map,dummy,
-map,index_ln_q,
-map,index_ln_sd,
-map,index_q_beta,
-map,index_q_dev,
-map,index_q_dev_ln_sd,
-map,index_q_ln_sd,
-map,index_q_rho,
-map,init_dev,
-map,ln_f,ln_fishing_mortality
-map,ln_finit,ln_fishing_mortality_initial
-map,ln_flimit,ln_fishing_mortality_limit
-map,ln_ftarget,ln_fishing_mortality_target
-map,ln_m1,
-map,ln_m1_dev,
-map,ln_pop_scalar,
-map,ln_sel_slp,
-map,ln_sel_slp_dev,
-map,log_gam_a,
-map,log_gam_b,
-map,log_phi,
-map,m1_beta,
-map,m1_dev_ln_sd,
-map,m1_rho,
-map,proj_f_prop,
-map,r0,
-map,r_ln_sd,
-map,rec_dev,recruitment_deviations
-map,sel_coff,
-map,sel_coff_dev,
-map,sel_curve_pen,
-map,sel_curve_pen,
-map,sel_dev_ln_sd,
-map,sel_inf,
-map,sel_inf_dev,
-phase_params,alpha,
-phase_params,beta,
-phase_params,beta_rec_pars,
-phase_params,catch_ln_sd,ln_catch_sd
-phase_params,comp_weights,composition_weights
-phase_params,diet_comp_weights,diet_composition_weights
-phase_params,dummy,
-phase_params,index_ln_q,
-phase_params,index_ln_sd,
-phase_params,index_q_beta,
-phase_params,index_q_dev,
-phase_params,index_q_dev_ln_sd,
-phase_params,index_q_ln_sd,
-phase_params,index_q_rho,
-phase_params,init_dev,
-phase_params,ln_f,ln_fishing_mortality
-phase_params,ln_finit,ln_fishing_mortality_initial
-phase_params,ln_flimit,ln_fishing_mortality_limit
-phase_params,ln_ftarget,ln_fishing_mortality_target
-phase_params,ln_m1,
-phase_params,ln_m1_dev,
-phase_params,ln_pop_scalar,
-phase_params,ln_sel_slp,
-phase_params,ln_sel_slp_dev,
-phase_params,log_gam_a,
-phase_params,log_gam_b,
-phase_params,log_phi,
-phase_params,m1_beta,
-phase_params,m1_dev_ln_sd,
-phase_params,m1_rho,
-phase_params,proj_f_prop,
-phase_params,r0,
-phase_params,r_ln_sd,
-phase_params,rec_dev,recruitment_deviations
-phase_params,sel_coff,
-phase_params,sel_coff_dev,
-phase_params,sel_curve_pen,
-phase_params,sel_curve_pen,
-phase_params,sel_dev_ln_sd,
-phase_params,sel_inf,
-phase_params,sel_inf_dev,
-quantities,age_hat,catch
-quantities,age_obs_hat,catch_adjusted
-quantities,avail_food,
-quantities,avg_r,recruitment_mean
-quantities,avgn_at_age,abundance_average
-quantities,b0,
-quantities,b_eaten,
-quantities,b_eaten_as_prey,
-quantities,biomass,
-quantities,biomass_at_age,biomass
-quantities,biomass_depletion,biomass_biomass_unfished
-quantities,catch_hat,landings
-quantities,comp_hat,
-quantities,comp_n,
-quantities,comp_obs,
-quantities,consumption_at_age,
-quantities,diet_hat,
-quantities,diet_obs,
-quantities,dynamicb0,
-quantities,dynamicsb0,
-quantities,dynamicsbf,
-quantities,exploitable_biomass,
-quantities,f_at_age,fishing_mortality
-quantities,f_flt,fishing_mortality
-quantities,f_flt_age,fishing_mortality
-quantities,f_spp,fishing_mortality
-quantities,flimit,fishing_mortality_target
-quantities,flt_sel_maxage,
-quantities,ft,
-quantities,ftarget,fishing_mortality_limit
-quantities,gam_a,
-quantities,gam_b,
-quantities,index_hat,
-quantities,index_q,
-quantities,jnll,
-quantities,jnll_comp,
-quantities,ln_catch_sd,
-quantities,ln_index_sd,
-quantities,log_index_hat,
-quantities,log_ssb,log_spawning_biomass
-quantities,m1_at_age,m1
-quantities,m2_at_age,m2
-quantities,m2_prop,proportion_m2
-quantities,m_at_age,natural_mortality
-quantities,max_catch_hat,
-quantities,n_at_age,abundance
-quantities,nbyage0,abundance_rec_hat_f0
-quantities,nbyagef,abundance_rec_hat_f_target
-quantities,nbyagespr,abundance_spr
-quantities,pop_scalar,
-quantities,proj_f,fishing_mortality
-quantities,r,recruitment
-quantities,r0,
-quantities,r_hat,
-quantities,r_init,recruitment_initial
-quantities,r_sd,recruitment_sd
-quantities,ration,
-quantities,sb0,spawning_biomass_0
-quantities,sbf,spawning_biomass_target
-quantities,sel,selectivity
-quantities,spr0,
-quantities,sprfinit,spr_initial
-quantities,sprlimit,spr_limit
-quantities,sprtarget,spr_target
-quantities,ssb,spawning_biomass
-quantities,ssb_depletion,spawning_biomass_depletion
-quantities,steepness,
-quantities,stom_div_bio,
-quantities,suit_other,
-quantities,suitability,
-quantities,true_age_comp_hat,
-quantities,unweighted_jnll_comp,
-quantities,vulnerability,
-quantities,vulnerability_other,
-quantities,z_at_age,total_mortality
-sdrep,biomass,
-sdrep,index_ln_q,
-sdrep,init_dev,
-sdrep,ln_f,
-sdrep,ln_sel_slp,
-sdrep,ln_sel_slp_dev,
-sdrep,log_index_hat,
-sdrep,log_ssb,log_spawning_biomass
-sdrep,pop_scalar,
-sdrep,r,recruitment
-sdrep,r_sd,recruitment_sd
-sdrep,rec_dev,recruitment_deviations
-sdrep,rec_pars,recruitment_parameters
-sdrep,sel_inf,
-sdrep,sel_inf_dev,
-sdrep,ssb,spawning_biomass
+module_name,label,alt_label,unit
+initial_params,ln_finit,,
+initial_params,ln_flimit,ln_fishing_mortality_limit,
+initial_params,ln_ftarget,ln_fishing_mortality_target,
+initial_params,ln_m1,,
+initial_params,ln_m1_dev,,
+initial_params,ln_pop_scalar,,
+initial_params,ln_sel_slp,,
+initial_params,ln_sel_slp_dev,,
+initial_params,log_gam_a,,
+initial_params,log_gam_b,,
+initial_params,log_phi,,
+initial_params,m1_beta,,
+initial_params,m1_dev_ln_sd,,
+initial_params,m1_rho,,
+initial_params,proj_f_prop,,
+initial_params,r0,,
+initial_params,r_ln_sd,,
+initial_params,rec_dev,recruitment_deviations,
+initial_params,sel_coff,,
+initial_params,sel_coff_dev,,
+initial_params,sel_curve_pen,,
+initial_params,sel_curve_pen,,
+initial_params,sel_dev_ln_sd,,
+initial_params,sel_inf,,
+initial_params,sel_inf_dev,,
+map,1,,
+map,2,,
+map,3,,
+map,alpha,,
+map,beta,,
+map,beta_rec_pars,,
+map,catch_ln_sd,ln_catch_sd,
+map,comp_weights,composition_weights,kg
+map,diet_comp_weights,diet_composition_weights,kg
+map,dummy,,
+map,index_ln_q,,
+map,index_ln_sd,,
+map,index_q_beta,,
+map,index_q_dev,,
+map,index_q_dev_ln_sd,,
+map,index_q_ln_sd,,
+map,index_q_rho,,
+map,init_dev,,
+map,ln_f,ln_fishing_mortality,
+map,ln_finit,ln_fishing_mortality_initial,
+map,ln_flimit,ln_fishing_mortality_limit,
+map,ln_ftarget,ln_fishing_mortality_target,
+map,ln_m1,,
+map,ln_m1_dev,,
+map,ln_pop_scalar,,
+map,ln_sel_slp,,
+map,ln_sel_slp_dev,,
+map,log_gam_a,,
+map,log_gam_b,,
+map,log_phi,,
+map,m1_beta,,
+map,m1_dev_ln_sd,,
+map,m1_rho,,
+map,proj_f_prop,,
+map,r0,,
+map,r_ln_sd,,
+map,rec_dev,recruitment_deviations,
+map,sel_coff,,
+map,sel_coff_dev,,
+map,sel_curve_pen,,
+map,sel_curve_pen,,
+map,sel_dev_ln_sd,,
+map,sel_inf,,
+map,sel_inf_dev,,
+phase_params,alpha,,
+phase_params,beta,,
+phase_params,beta_rec_pars,,
+phase_params,catch_ln_sd,ln_catch_sd,
+phase_params,comp_weights,composition_weights,kg
+phase_params,diet_comp_weights,diet_composition_weights,kg
+phase_params,dummy,,
+phase_params,index_ln_q,,
+phase_params,index_ln_sd,,
+phase_params,index_q_beta,,
+phase_params,index_q_dev,,
+phase_params,index_q_dev_ln_sd,,
+phase_params,index_q_ln_sd,,
+phase_params,index_q_rho,,
+phase_params,init_dev,,
+phase_params,ln_f,ln_fishing_mortality,
+phase_params,ln_finit,ln_fishing_mortality_initial,
+phase_params,ln_flimit,ln_fishing_mortality_limit,
+phase_params,ln_ftarget,ln_fishing_mortality_target,
+phase_params,ln_m1,,
+phase_params,ln_m1_dev,,
+phase_params,ln_pop_scalar,,
+phase_params,ln_sel_slp,,
+phase_params,ln_sel_slp_dev,,
+phase_params,log_gam_a,,
+phase_params,log_gam_b,,
+phase_params,log_phi,,
+phase_params,m1_beta,,
+phase_params,m1_dev_ln_sd,,
+phase_params,m1_rho,,
+phase_params,proj_f_prop,,
+phase_params,r0,,
+phase_params,r_ln_sd,,
+phase_params,rec_dev,recruitment_deviations,
+phase_params,sel_coff,,
+phase_params,sel_coff_dev,,
+phase_params,sel_curve_pen,,
+phase_params,sel_curve_pen,,
+phase_params,sel_dev_ln_sd,,
+phase_params,sel_inf,,
+phase_params,sel_inf_dev,,
+quantities,age_hat,catch,kg
+quantities,age_obs_hat,catch_adjusted,kg
+quantities,avail_food,,kg
+quantities,avg_r,recruitment_mean,
+quantities,avgn_at_age,abundance_average,numbers
+quantities,b0,,kg
+quantities,b_eaten,,kg
+quantities,b_eaten_as_prey,,kg
+quantities,biomass,,kg
+quantities,biomass_at_age,biomass,kg
+quantities,biomass_depletion,biomass_biomass_unfished,kg
+quantities,catch_hat,landings,kg
+quantities,comp_hat,,
+quantities,comp_n,,
+quantities,comp_obs,,kg
+quantities,consumption_at_age,,kg
+quantities,diet_hat,,
+quantities,diet_obs,,kg
+quantities,dynamicb0,,kg
+quantities,dynamicsb0,,kg
+quantities,dynamicsbf,,kg
+quantities,exploitable_biomass,,kg
+quantities,f_at_age,fishing_mortality,
+quantities,f_flt,fishing_mortality,
+quantities,f_flt_age,fishing_mortality,
+quantities,f_spp,fishing_mortality,
+quantities,flimit,fishing_mortality_target,
+quantities,flt_sel_maxage,,
+quantities,ft,,
+quantities,ftarget,fishing_mortality_limit,
+quantities,gam_a,,
+quantities,gam_b,,
+quantities,index_hat,,
+quantities,index_q,,
+quantities,jnll,,
+quantities,jnll_comp,,
+quantities,ln_catch_sd,,
+quantities,ln_index_sd,,
+quantities,log_index_hat,,
+quantities,log_ssb,log_spawning_biomass,kg
+quantities,m1_at_age,m1,
+quantities,m2_at_age,m2,
+quantities,m2_prop,proportion_m2,
+quantities,m_at_age,natural_mortality,
+quantities,max_catch_hat,,kg
+quantities,n_at_age,abundance,numbers
+quantities,nbyage0,abundance_rec_hat_f0,numbers
+quantities,nbyagef,abundance_rec_hat_f_target,
+quantities,nbyagespr,abundance_spr,numbers
+quantities,pop_scalar,,
+quantities,proj_f,fishing_mortality,
+quantities,r,recruitment,
+quantities,r0,,
+quantities,r_hat,,
+quantities,r_init,recruitment_initial,
+quantities,r_sd,recruitment_sd,
+quantities,ration,,
+quantities,sb0,spawning_biomass_0,kg
+quantities,sbf,spawning_biomass_target,kg
+quantities,sel,selectivity,
+quantities,spr0,,
+quantities,sprfinit,spr_initial,
+quantities,sprlimit,spr_limit,
+quantities,sprtarget,spr_target,
+quantities,ssb,spawning_biomass,kg
+quantities,ssb_depletion,spawning_biomass_depletion,kg
+quantities,steepness,,
+quantities,stom_div_bio,,
+quantities,suit_other,,
+quantities,suitability,,
+quantities,true_age_comp_hat,,
+quantities,unweighted_jnll_comp,,
+quantities,vulnerability,,
+quantities,vulnerability_other,,
+quantities,z_at_age,total_mortality,
+sdrep,biomass,,kg
+sdrep,index_ln_q,,
+sdrep,init_dev,,
+sdrep,ln_f,,
+sdrep,ln_sel_slp,,
+sdrep,ln_sel_slp_dev,,
+sdrep,log_index_hat,,
+sdrep,log_ssb,log_spawning_biomass,kg
+sdrep,pop_scalar,,kg
+sdrep,r,recruitment,
+sdrep,r_sd,recruitment_sd,
+sdrep,rec_dev,recruitment_deviations,
+sdrep,rec_pars,recruitment_parameters,
+sdrep,sel_inf,,
+sdrep,sel_inf_dev,,
+sdrep,ssb,spawning_biomass,kg
diff --git a/inst/resources/ss3_var_names.csv b/inst/resources/ss3_var_names.csv
index 158a7fd0..ce9d6a12 100644
--- a/inst/resources/ss3_var_names.csv
+++ b/inst/resources/ss3_var_names.csv
@@ -1,283 +1,283 @@
-module_name,label,alt_label
-DERIVED_QUANTITIES,SSB_Virgin,spawning_biomass_unfished
-DERIVED_QUANTITIES,SSB_Initial,spawning_biomass_initial
-DERIVED_QUANTITIES,SSB,spawning_biomass
-DERIVED_QUANTITIES,Recr_Virgin,spawning_biomass
-DERIVED_QUANTITIES,Recr_Initial,recruitment_initial
-DERIVED_QUANTITIES,Recr,recruitment
-DERIVED_QUANTITIES,SPRratio,spawning_potential_ratio_ratio
-AGE_SELEX,F,fishing_mortality
-DERIVED_QUANTITIES,F,fishing_mortality
-F_AT_AGE,F,fishing_mortality
-DERIVED_QUANTITIES,Bratio,biomass_ratio
-DERIVED_QUANTITIES,SSB_unfished,spawning_biomass_unfished
-DERIVED_QUANTITIES,Totbio_unfished,biomass_unfished
-DERIVED_QUANTITIES,SmryBio_unfished,biomass_unfished_midyear
-DERIVED_QUANTITIES,Recr_unfished,recruitment_unfished
-DERIVED_QUANTITIES,SSB_Btgt,spawning_biomass_at_biomass_target
-DERIVED_QUANTITIES,SPR_Btgt,spawning_potential_ratio_biomass_target
-DERIVED_QUANTITIES,annF_Btgt,annual_F_biomass_target
-DERIVED_QUANTITIES,Dead_Catch_Btgt,dead_catch_biomass_target
-DERIVED_QUANTITIES,SSB_SPR,spawning_biomass_spawning_potential_ratio
-DERIVED_QUANTITIES,annF_SPR,fishing_mortality_spawning_potential_ratio
-DERIVED_QUANTITIES,Dead_Catch_SPR,dead_catch_spawning_potential_ratio
-DERIVED_QUANTITIES,SSB_MSY,spawning_biomass_msy
-DERIVED_QUANTITIES,SPR_MSY,spawning_potential_ratio_msy
-DERIVED_QUANTITIES,annF_MSY,f_msy
-DERIVED_QUANTITIES,Dead_Catch_MSY,dead_catch_msy
-DERIVED_QUANTITIES,Ret_Catch_MSY,catch_msy
-DERIVED_QUANTITIES,B_MSY/SSB_unfished,biomass_msy_spawning_biomass_unfished
-DERIVED_QUANTITIES,ForeCatch,catch
-DERIVED_QUANTITIES,OFLCatch,catch_ofl
-DERIVED_QUANTITIES,ForeCatchret,catch_retained
-DERIVED_QUANTITIES,ln(SPB),ln_spb
-MGparm_By_Year_after_adjustments,change?,
-MGparm_By_Year_after_adjustments,natm_uniform,
-MGparm_By_Year_after_adjustments,l_at_amin,length_at_age_min
-MGparm_By_Year_after_adjustments,l_at_amax,length_at_age_max
-MGparm_By_Year_after_adjustments,vonbert_k,k
-MGparm_By_Year_after_adjustments,cv_young,
-MGparm_By_Year_after_adjustments,cv_old,
-MGparm_By_Year_after_adjustments,wtlen,
-MGparm_By_Year_after_adjustments,mat50%,
-MGparm_By_Year_after_adjustments,mat_slope,
-MGparm_By_Year_after_adjustments,eggs/kg_inter,
-MGparm_By_Year_after_adjustments,eggs/kg_slope_wt,
-MGparm_By_Year_after_adjustments,cohortgrowdev,
-MGparm_By_Year_after_adjustments,fracfemale,proportion_female
-OVERALL_COMPS,freq,
-OVERALL_COMPS,cum,
-OVERALL_COMPS,female,
-OVERALL_COMPS,male,
-BIOMASS_AT_AGE,biomass,
-CATCH,obs,landings_observed_weight
-INDEX_2,obs,index_observed
-CATCH,exp,landings_predicted_weight
-INDEX_2,exp,index_predicted
-CATCH,mult,
-CATCH,exp*mult,
-CATCH,f,
-CATCH,like,
-INDEX_2,like,
-CATCH,sel_bio,
-CATCH,kill_bio,
-CATCH,ret_bio,catch_weight
-CATCH,sel_num,
-CATCH,kill_num,
-CATCH,ret_num,catch_numbers
-CATCH,discard,discards_weight
-CATCH_AT_AGE,catch,catch_weight
-MEAN_SIZE_TIMESERIES,mean_size,
-NUMBERS_AT_AGE,numbers,abundance
-NUMBERS_AT_LENGTH,numbers,abundance
-SPAWN_RECRUIT,spawnbio,spawning_biomass
-TIME_SERIES,spawnbio,spawning_biomass
-SPAWN_RECRUIT,exp_recr,expected_recruitment
-SPAWN_RECRUIT,with_regime,
-SPAWN_RECRUIT,bias_adjusted,
-SPAWN_RECRUIT,pred_recr,predicted_recruitment
-INDEX_2,dev,
-SPAWN_RECRUIT,dev,recruitment_deviations
-SPAWN_RECRUIT,biasadjuster,
-SPAWN_RECRUIT,mature_bio,mature_biomass
-TIME_SERIES,mature_bio,mature_biomass
-SPAWN_RECRUIT,mature_num,mature_abundance
-TIME_SERIES,mature_num,mature_abundance
-SPAWN_RECRUIT,raw_dev,
-TIME_SERIES,bio_all,biomass
-TIME_SERIES,bio_smry,biomass_reference_age
-TIME_SERIES,recruit,recruitment
-TIME_SERIES,smrybio,biomass_midyear
-TIME_SERIES,smrynum,abundance_midyear
-TIME_SERIES,sel(b),catch_selected
-TIME_SERIES,dead(b),catch_dead
-TIME_SERIES,retain(b),catch_retained
-TIME_SERIES,sel(n),numbers
-TIME_SERIES,dead(n),numbers_dead
-TIME_SERIES,retain(n),numbers_retained
-TIME_SERIES,obs_cat,catch_observed
-TIME_SERIES,ssb_vir_lh,spawning_biomass_unfished
-TIME_SERIES,abc_buffer,
-INDEX_2,month,
-,std_in,
-INDEX_2,like+log(s),
-INDEX_2,suprper,
-,exp_cat,catch_expected
-,catch_mult,
-,exp_cat*catch_mult,
-,f_rate,
-CATCH,vuln_bio,
-INDEX_2,vuln_bio,
-INDEX_2,calc_q,
-INDEX_2,eff_q,
-INDEX_2,use,
-AGE_SELEX,sel,age_selectivity
-AGE_SELEX,Fecund,fecundity
-AGE_SELEX,bodywt,body_weight
-AGE_SELEX,dead_nums,dead_numbers
-AGE_SELEX,dead*wt,
-,Ret,selectivity_retain
-,Mort,selectivity_mortality
-,Keep,selectivity_keep
-,Dead,selectivity_dead
-,Dynamic_Bzero,biomass_zero
-Kobe_Plot,b/bmsy,b_bmsy
-Kobe_Plot,f/fmsy,f_fmsy
-,Fstd_Btgt,
-AGE_SELEX,Asel,asel
-AGE_SELEX,Fecund,fecundity
-AGE_SELEX,Asel2,selectivity_age
-AGE_SELEX,sel*wt,
-AGE_SELEX,sel*ret*wt,
-AGE_SELEX,sel_nums,
-AGE_SELEX,sel*ret_nums,
-AGE_SELEX,Aret,retention
-PARAMETERS,NatM_uniform,natural_mortality_uniform
-PARAMETERS,L_at_Amin,length_at_age_min
-PARAMETERS,L_at_Amax,length_at_age_max
-PARAMETERS,VonBert_K,k
-PARAMETERS,SD_young,sd_young
-PARAMETERS,SD_old,sd_old
-PARAMETERS,Wtlen,weight_length
-PARAMETERS,Mat50%,maturity_50
-PARAMETERS,Mat_slope,maturity_slope
-PARAMETERS,Eggs_scalar,eggs_scalar
-PARAMETERS,Eggs_exp_len,eggs_exp_len
-PARAMETERS,CohortGrowDev,cohort_grow_dev
-PARAMETERS,FracFemale,proportion_female
-PARAMETERS,SR_LN(R0),ln_recruitment_unfished
-PARAMETERS,SR_BH_steep,beverton_holt_steepness
-PARAMETERS,SR_sigmaR,sigma_recruitment
-PARAMETERS,SR_regime,sr_regime
-PARAMETERS,SR_autocorr,sr_autocorrelation
-PARAMETERS,initial_age,
-PARAMETERS,recruitment_deviations,
-PARAMETERS,ForeRecr,recruitment
-PARAMETERS,LnQ_base,ln_catchability_base
-PARAMETERS,Q_extraSD,catchability_extra_sd
-PARAMETERS,Size_DblN_peak,
-PARAMETERS,Size_DblN_top_logit,
-PARAMETERS,Size_DblN_ascend_se,
-PARAMETERS,Size_DblN_descend_se,
-PARAMETERS,Size_DblN_start_logit,
-PARAMETERS,Size_DblN_end_logit,
-PARAMETERS,Retain_L_infl,
-PARAMETERS,Retain_L_width,
-PARAMETERS,Retain_L_asymptote_logit,
-PARAMETERS,Retain_L_maleoffset,
-PARAMETERS,SzSel_Male_Peak,
-PARAMETERS,SzSel_Male_Ascend,
-PARAMETERS,SzSel_Male_Descend,
-PARAMETERS,SzSel_Male_Final,
-PARAMETERS,SzSel_Male_Scale,
-PARAMETERS,Retain_L_infl,
-PARAMETERS,Retain_L_width,
-PARAMETERS,Retain_L_asymptote_logit,
-PARAMETERS,Retain_L_infl,
-PARAMETERS,Retain_L_width,
-PARAMETERS,Retain_L_asymptote_logit,
-FIT_LEN_COMPS,part,
-FIT_LEN_COMPS,nsamp_in,
-FIT_LEN_COMPS,nsamp_adj,
-FIT_LEN_COMPS,nsamp_dm,
-FIT_LEN_COMPS,effn,
-FIT_LEN_COMPS,method,
-FIT_LEN_COMPS,dm_parm,
-FIT_LEN_COMPS,mv_t_parm,
-FIT_LEN_COMPS,all_obs_mean,
-FIT_LEN_COMPS,all_exp_mean,
-FIT_LEN_COMPS,all_delta,
-FIT_LEN_COMPS,all_exp,
-FIT_LEN_COMPS,all_durwat,
-FIT_LEN_COMPS,f_obs_mean,
-FIT_LEN_COMPS,f_exp_mean,
-FIT_LEN_COMPS,f_delta,
-FIT_LEN_COMPS,f_exp,
-FIT_LEN_COMPS,f_durwat,
-FIT_LEN_COMPS,m_obs_mean,
-FIT_LEN_COMPS,m_exp_mean,
-FIT_LEN_COMPS,m_delta,
-FIT_LEN_COMPS,m_exp,
-FIT_LEN_COMPS,m_durwat,
-FIT_LEN_COMPS,%f_obs,
-FIT_LEN_COMPS,%f_exp,
-FIT_AGE_COMPS,part,
-FIT_AGE_COMPS,ageerr,
-FIT_AGE_COMPS,lbin_lo,
-FIT_AGE_COMPS,lbin_hi,
-FIT_AGE_COMPS,nsamp_in,
-FIT_AGE_COMPS,nsamp_adj,
-FIT_AGE_COMPS,nsamp_dm,
-FIT_AGE_COMPS,effn,
-FIT_AGE_COMPS,all_obs_mean,
-FIT_AGE_COMPS,all_exp_mean,
-FIT_AGE_COMPS,all_delta,
-FIT_AGE_COMPS,all_exp,
-FIT_AGE_COMPS,all_durwat,
-FIT_AGE_COMPS,f_obs_mean,
-FIT_AGE_COMPS,f_exp_mean,
-FIT_AGE_COMPS,f_delta,
-FIT_AGE_COMPS,f_exp,
-FIT_AGE_COMPS,f_durwat,
-FIT_AGE_COMPS,m_obs_mean,
-FIT_AGE_COMPS,m_exp_mean,
-FIT_AGE_COMPS,m_delta,
-FIT_AGE_COMPS,m_exp,
-FIT_AGE_COMPS,m_durwat,
-FIT_AGE_COMPS,%f_obs,
-FIT_AGE_COMPS,%f_exp,
-LEN_SELEX,Lsel,selectivity_length
-LEN_SELEX,Ret,retention
-LEN_SELEX,Mort,discard_mortality
-LEN_SELEX,Keep,keep
-LEN_SELEX,Dead,dead
-Growth_Parameters,a1,
-Growth_Parameters,a2,
-Growth_Parameters,l_a_a1,
-Growth_Parameters,l_a_a2,
-Growth_Parameters,k,
-Growth_Parameters,a_a_l0,
-Growth_Parameters,linf,
-Growth_Parameters,cvmin,
-Growth_Parameters,cvmax,
-Growth_Parameters,natm_amin,
-Growth_Parameters,natm_max,
-Growth_Parameters,m_age0,
-Growth_Parameters,m_nages,
-Growth_Parameters,wtlen1,
-Growth_Parameters,wtlen2,
-Growth_Parameters,mat1,
-Growth_Parameters,mat2,
-Growth_Parameters,fec1,
-Growth_Parameters,fec2,
-MEAN_BODY_WT(Begin),mean_body_wt,
-Dynamic_Bzero,Dynamic_Bzero,dynamic_biomass_zero
-,sprtarg,spr_target
-,btarg,biomass_target
-,SBzero,spawning_biomass_zero
-,seas_dur,season_duration
-,annual_f,fishing_mortality
-,annual_m,natural_mortality
-,bio_all_eq,biomass
-,bio_smry_eq,biomass_reference_age
-,ssbfished_eq,spawning_biomass_fished
-,ssbfished_r,spawning_biomass_fished_recruitment
-,f_std,fishing_mortality
-,ave_f,fishing_mortality_average
-,maxf,fishing_mortality_max
-,tot_exploit,
-,dead_catch_b,
-,retain_catch_n,
-,retain_catch_b,
-,enc_catch_n,
-,dead_catch_n,
-,m,natural_mortality
-,enc_catch,
-,mnage_smry,
-,mnage_catch,
-,ssb,spawning_biomass
-,ssb_nofishing,spawning_biomass_no_fishing
-,f_msy,fishing_mortality_msy
-DISCARD_OUTPUT,discard_obs,discard_observed
-DISCARD_OUTPUT,discard_exp,discard_predicted
-DISCARD_OUTPUT,discard_dev,discard_deviation
+module_name,label,alt_label,unit
+DERIVED_QUANTITIES,SSB_Virgin,spawning_biomass_unfished,kg
+DERIVED_QUANTITIES,SSB_Initial,spawning_biomass_initial,kg
+DERIVED_QUANTITIES,SSB,spawning_biomass,kg
+DERIVED_QUANTITIES,Recr_Virgin,spawning_biomass,kg
+DERIVED_QUANTITIES,Recr_Initial,recruitment_initial,kg
+DERIVED_QUANTITIES,Recr,recruitment,kg
+DERIVED_QUANTITIES,SPRratio,spawning_potential_ratio_ratio,
+AGE_SELEX,F,fishing_mortality,
+DERIVED_QUANTITIES,F,fishing_mortality,
+F_AT_AGE,F,fishing_mortality,
+DERIVED_QUANTITIES,Bratio,biomass_ratio,
+DERIVED_QUANTITIES,SSB_unfished,spawning_biomass_unfished,kg
+DERIVED_QUANTITIES,Totbio_unfished,biomass_unfished,kg
+DERIVED_QUANTITIES,SmryBio_unfished,biomass_unfished_midyear,kg
+DERIVED_QUANTITIES,Recr_unfished,recruitment_unfished,kg
+DERIVED_QUANTITIES,SSB_Btgt,spawning_biomass_at_biomass_target,kg
+DERIVED_QUANTITIES,SPR_Btgt,spawning_potential_ratio_biomass_target,
+DERIVED_QUANTITIES,annF_Btgt,annual_F_biomass_target,
+DERIVED_QUANTITIES,Dead_Catch_Btgt,dead_catch_biomass_target,kg
+DERIVED_QUANTITIES,SSB_SPR,spawning_biomass_spawning_potential_ratio,
+DERIVED_QUANTITIES,annF_SPR,fishing_mortality_spawning_potential_ratio,
+DERIVED_QUANTITIES,Dead_Catch_SPR,dead_catch_spawning_potential_ratio,
+DERIVED_QUANTITIES,SSB_MSY,spawning_biomass_msy,kg
+DERIVED_QUANTITIES,SPR_MSY,spawning_potential_ratio_msy,
+DERIVED_QUANTITIES,annF_MSY,f_msy,
+DERIVED_QUANTITIES,Dead_Catch_MSY,dead_catch_msy,kg
+DERIVED_QUANTITIES,Ret_Catch_MSY,catch_msy,kg
+DERIVED_QUANTITIES,B_MSY/SSB_unfished,biomass_msy_spawning_biomass_unfished,
+DERIVED_QUANTITIES,ForeCatch,catch,kg
+DERIVED_QUANTITIES,OFLCatch,catch_ofl,kg
+DERIVED_QUANTITIES,ForeCatchret,catch_retained,kg
+DERIVED_QUANTITIES,ln(SPB),ln_spb,
+MGparm_By_Year_after_adjustments,change?,,
+MGparm_By_Year_after_adjustments,natm_uniform,,
+MGparm_By_Year_after_adjustments,l_at_amin,length_at_age_min,cm
+MGparm_By_Year_after_adjustments,l_at_amax,length_at_age_max,cm
+MGparm_By_Year_after_adjustments,vonbert_k,k,
+MGparm_By_Year_after_adjustments,cv_young,,
+MGparm_By_Year_after_adjustments,cv_old,,
+MGparm_By_Year_after_adjustments,wtlen,,
+MGparm_By_Year_after_adjustments,mat50%,,
+MGparm_By_Year_after_adjustments,mat_slope,,
+MGparm_By_Year_after_adjustments,eggs/kg_inter,,
+MGparm_By_Year_after_adjustments,eggs/kg_slope_wt,,
+MGparm_By_Year_after_adjustments,cohortgrowdev,,
+MGparm_By_Year_after_adjustments,fracfemale,proportion_female,
+OVERALL_COMPS,freq,,
+OVERALL_COMPS,cum,,kg
+OVERALL_COMPS,female,,kg
+OVERALL_COMPS,male,,kg
+BIOMASS_AT_AGE,biomass,,kg
+CATCH,obs,landings_observed_weight,kg
+INDEX_2,obs,index_observed,
+CATCH,exp,landings_predicted_weight,kg
+INDEX_2,exp,index_predicted,
+CATCH,mult,,
+CATCH,exp*mult,,
+CATCH,f,,
+CATCH,like,,
+INDEX_2,like,,
+CATCH,sel_bio,,kg
+CATCH,kill_bio,,kg
+CATCH,ret_bio,catch_weight,kg
+CATCH,sel_num,,kg
+CATCH,kill_num,,kg
+CATCH,ret_num,catch_numbers,kg
+CATCH,discard,discards_weight,kg
+CATCH_AT_AGE,catch,catch_weight,kg
+MEAN_SIZE_TIMESERIES,mean_size,,kg
+NUMBERS_AT_AGE,numbers,abundance,numbers
+NUMBERS_AT_LENGTH,numbers,abundance,numbers
+SPAWN_RECRUIT,spawnbio,spawning_biomass,kg
+TIME_SERIES,spawnbio,spawning_biomass,kg
+SPAWN_RECRUIT,exp_recr,expected_recruitment,
+SPAWN_RECRUIT,with_regime,,
+SPAWN_RECRUIT,bias_adjusted,,
+SPAWN_RECRUIT,pred_recr,predicted_recruitment,
+INDEX_2,dev,,
+SPAWN_RECRUIT,dev,recruitment_deviations,
+SPAWN_RECRUIT,biasadjuster,,
+SPAWN_RECRUIT,mature_bio,mature_biomass,kg
+TIME_SERIES,mature_bio,mature_biomass,kg
+SPAWN_RECRUIT,mature_num,mature_abundance,kg
+TIME_SERIES,mature_num,mature_abundance,kg
+SPAWN_RECRUIT,raw_dev,,
+TIME_SERIES,bio_all,biomass,kg
+TIME_SERIES,bio_smry,biomass_reference_age,
+TIME_SERIES,recruit,recruitment,
+TIME_SERIES,smrybio,biomass_midyear,kg
+TIME_SERIES,smrynum,abundance_midyear,kg
+TIME_SERIES,sel(b),catch_selected,kg
+TIME_SERIES,dead(b),catch_dead,kg
+TIME_SERIES,retain(b),catch_retained,kg
+TIME_SERIES,sel(n),numbers,kg
+TIME_SERIES,dead(n),numbers_dead,kg
+TIME_SERIES,retain(n),numbers_retained,kg
+TIME_SERIES,obs_cat,catch_observed,kg
+TIME_SERIES,ssb_vir_lh,spawning_biomass_unfished,kg
+TIME_SERIES,abc_buffer,,kg
+INDEX_2,month,,
+,std_in,,
+INDEX_2,like+log(s),,
+INDEX_2,suprper,,
+,exp_cat,catch_expected,kg
+,catch_mult,,
+,exp_cat*catch_mult,,
+,f_rate,,
+CATCH,vuln_bio,,kg
+INDEX_2,vuln_bio,,kg
+INDEX_2,calc_q,,
+INDEX_2,eff_q,,
+INDEX_2,use,,
+AGE_SELEX,sel,age_selectivity,
+AGE_SELEX,Fecund,fecundity,
+AGE_SELEX,bodywt,body_weight,kg
+AGE_SELEX,dead_nums,dead_numbers,numbers
+AGE_SELEX,dead*wt,,kg
+,Ret,selectivity_retain,
+,Mort,selectivity_mortality,
+,Keep,selectivity_keep,
+,Dead,selectivity_dead,
+,Dynamic_Bzero,biomass_zero,kg
+Kobe_Plot,b/bmsy,b_bmsy,
+Kobe_Plot,f/fmsy,f_fmsy,
+,Fstd_Btgt,,
+AGE_SELEX,Asel,asel,
+AGE_SELEX,Fecund,fecundity,
+AGE_SELEX,Asel2,selectivity_age,
+AGE_SELEX,sel*wt,,
+AGE_SELEX,sel*ret*wt,,
+AGE_SELEX,sel_nums,,numbers
+AGE_SELEX,sel*ret_nums,,numbers
+AGE_SELEX,Aret,retention,
+PARAMETERS,NatM_uniform,natural_mortality_uniform,
+PARAMETERS,L_at_Amin,length_at_age_min,cm
+PARAMETERS,L_at_Amax,length_at_age_max,cm
+PARAMETERS,VonBert_K,k,
+PARAMETERS,SD_young,sd_young,
+PARAMETERS,SD_old,sd_old,
+PARAMETERS,Wtlen,weight_length,
+PARAMETERS,Mat50%,maturity_50,
+PARAMETERS,Mat_slope,maturity_slope,
+PARAMETERS,Eggs_scalar,eggs_scalar,
+PARAMETERS,Eggs_exp_len,eggs_exp_len,
+PARAMETERS,CohortGrowDev,cohort_grow_dev,
+PARAMETERS,FracFemale,proportion_female,
+PARAMETERS,SR_LN(R0),ln_recruitment_unfished,
+PARAMETERS,SR_BH_steep,beverton_holt_steepness,
+PARAMETERS,SR_sigmaR,sigma_recruitment,
+PARAMETERS,SR_regime,sr_regime,
+PARAMETERS,SR_autocorr,sr_autocorrelation,
+PARAMETERS,initial_age,,
+PARAMETERS,recruitment_deviations,,
+PARAMETERS,ForeRecr,recruitment,
+PARAMETERS,LnQ_base,ln_catchability_base,
+PARAMETERS,Q_extraSD,catchability_extra_sd,
+PARAMETERS,Size_DblN_peak,,
+PARAMETERS,Size_DblN_top_logit,,
+PARAMETERS,Size_DblN_ascend_se,,
+PARAMETERS,Size_DblN_descend_se,,
+PARAMETERS,Size_DblN_start_logit,,
+PARAMETERS,Size_DblN_end_logit,,
+PARAMETERS,Retain_L_infl,,
+PARAMETERS,Retain_L_width,,
+PARAMETERS,Retain_L_asymptote_logit,,
+PARAMETERS,Retain_L_maleoffset,,
+PARAMETERS,SzSel_Male_Peak,,
+PARAMETERS,SzSel_Male_Ascend,,
+PARAMETERS,SzSel_Male_Descend,,
+PARAMETERS,SzSel_Male_Final,,
+PARAMETERS,SzSel_Male_Scale,,
+PARAMETERS,Retain_L_infl,,
+PARAMETERS,Retain_L_width,,
+PARAMETERS,Retain_L_asymptote_logit,,
+PARAMETERS,Retain_L_infl,,
+PARAMETERS,Retain_L_width,,
+PARAMETERS,Retain_L_asymptote_logit,,
+FIT_LEN_COMPS,part,,
+FIT_LEN_COMPS,nsamp_in,,
+FIT_LEN_COMPS,nsamp_adj,,
+FIT_LEN_COMPS,nsamp_dm,,
+FIT_LEN_COMPS,effn,,
+FIT_LEN_COMPS,method,,
+FIT_LEN_COMPS,dm_parm,,
+FIT_LEN_COMPS,mv_t_parm,,
+FIT_LEN_COMPS,all_obs_mean,,
+FIT_LEN_COMPS,all_exp_mean,,
+FIT_LEN_COMPS,all_delta,,
+FIT_LEN_COMPS,all_exp,,
+FIT_LEN_COMPS,all_durwat,,
+FIT_LEN_COMPS,f_obs_mean,,
+FIT_LEN_COMPS,f_exp_mean,,
+FIT_LEN_COMPS,f_delta,,
+FIT_LEN_COMPS,f_exp,,
+FIT_LEN_COMPS,f_durwat,,
+FIT_LEN_COMPS,m_obs_mean,,
+FIT_LEN_COMPS,m_exp_mean,,
+FIT_LEN_COMPS,m_delta,,
+FIT_LEN_COMPS,m_exp,,
+FIT_LEN_COMPS,m_durwat,,
+FIT_LEN_COMPS,%f_obs,,
+FIT_LEN_COMPS,%f_exp,,
+FIT_AGE_COMPS,part,,
+FIT_AGE_COMPS,ageerr,,
+FIT_AGE_COMPS,lbin_lo,,
+FIT_AGE_COMPS,lbin_hi,,
+FIT_AGE_COMPS,nsamp_in,,
+FIT_AGE_COMPS,nsamp_adj,,
+FIT_AGE_COMPS,nsamp_dm,,
+FIT_AGE_COMPS,effn,,
+FIT_AGE_COMPS,all_obs_mean,,
+FIT_AGE_COMPS,all_exp_mean,,
+FIT_AGE_COMPS,all_delta,,
+FIT_AGE_COMPS,all_exp,,
+FIT_AGE_COMPS,all_durwat,,
+FIT_AGE_COMPS,f_obs_mean,,
+FIT_AGE_COMPS,f_exp_mean,,
+FIT_AGE_COMPS,f_delta,,
+FIT_AGE_COMPS,f_exp,,
+FIT_AGE_COMPS,f_durwat,,
+FIT_AGE_COMPS,m_obs_mean,,
+FIT_AGE_COMPS,m_exp_mean,,
+FIT_AGE_COMPS,m_delta,,
+FIT_AGE_COMPS,m_exp,,
+FIT_AGE_COMPS,m_durwat,,
+FIT_AGE_COMPS,%f_obs,,
+FIT_AGE_COMPS,%f_exp,,
+LEN_SELEX,Lsel,selectivity_length,
+LEN_SELEX,Ret,retention,kg
+LEN_SELEX,Mort,discard_mortality,
+LEN_SELEX,Keep,keep,kg
+LEN_SELEX,Dead,dead,kg
+Growth_Parameters,a1,,
+Growth_Parameters,a2,,
+Growth_Parameters,l_a_a1,,cm
+Growth_Parameters,l_a_a2,,cm
+Growth_Parameters,k,,
+Growth_Parameters,a_a_l0,,
+Growth_Parameters,linf,,cm
+Growth_Parameters,cvmin,,
+Growth_Parameters,cvmax,,
+Growth_Parameters,natm_amin,,
+Growth_Parameters,natm_max,,
+Growth_Parameters,m_age0,,
+Growth_Parameters,m_nages,,
+Growth_Parameters,wtlen1,,
+Growth_Parameters,wtlen2,,
+Growth_Parameters,mat1,,
+Growth_Parameters,mat2,,
+Growth_Parameters,fec1,,
+Growth_Parameters,fec2,,
+MEAN_BODY_WT(Begin),mean_body_wt,,kg
+Dynamic_Bzero,Dynamic_Bzero,dynamic_biomass_zero,kg
+,sprtarg,spr_target,kg
+,btarg,biomass_target,kg
+,SBzero,spawning_biomass_zero,kg
+,seas_dur,season_duration,
+,annual_f,fishing_mortality,
+,annual_m,natural_mortality,
+,bio_all_eq,biomass,kg
+,bio_smry_eq,biomass_reference_age,
+,ssbfished_eq,spawning_biomass_fished,kg
+,ssbfished_r,spawning_biomass_fished_recruitment,kg
+,f_std,fishing_mortality,
+,ave_f,fishing_mortality_average,
+,maxf,fishing_mortality_max,
+,tot_exploit,,
+,dead_catch_b,,kg
+,retain_catch_n,,kg
+,retain_catch_b,,kg
+,enc_catch_n,,kg
+,dead_catch_n,,kg
+,m,natural_mortality,
+,enc_catch,,kg
+,mnage_smry,,
+,mnage_catch,,
+,ssb,spawning_biomass,kg
+,ssb_nofishing,spawning_biomass_no_fishing,kg
+,f_msy,fishing_mortality_msy,
+DISCARD_OUTPUT,discard_obs,discard_observed,kg
+DISCARD_OUTPUT,discard_exp,discard_predicted,kg
+DISCARD_OUTPUT,discard_dev,discard_deviation,kg
diff --git a/tests/testthat/test-convert_output.R b/tests/testthat/test-convert_output.R
index fb0b0119..1a546672 100644
--- a/tests/testthat/test-convert_output.R
+++ b/tests/testthat/test-convert_output.R
@@ -13,8 +13,8 @@ test_that("convert_output works for SS3", {
       file = file.path(all_models[i], "Report.sso")
     ))
 
-    # Check that the result has exactly 33 columns
-    expect_equal(dim(result)[2], 34)
+    # Check that the result has exactly 35 columns
+    expect_equal(dim(result)[2], 35)
   }
 
   # Test saving the output in a global environment
@@ -22,7 +22,7 @@ test_that("convert_output works for SS3", {
     file = file.path(all_models[1], "Report.sso")
   )
 
-  expect_equal(dim(output)[2], 34)
+  expect_equal(dim(output)[2], 35)
 })
 
 test_that("convert_output does not emit scalar case_when deprecation warning", {
@@ -82,14 +82,14 @@ test_that("r4ss::ss_output object is compatible.", {
   simple_r4ss <- readRDS(fs::path("fixtures", "r4ss_output", "simple_small", "simple_r4ss.rds"))
 
   expect_no_error(result <- convert_output(simple_r4ss))
-  expect_equal(dim(result)[2], 34)
+  expect_equal(dim(result)[2], 35)
 })
 
 test_that("URL input is compatible", {
   expect_no_error(result <- convert_output(
     file = "https://raw.githubusercontent.com/pfmc-assessments/petrale/main/models/2023.a050.003_FIMS_case-study_wtatage/Report.sso"
   ))
-  expect_equal(dim(result)[2], 34)
+  expect_equal(dim(result)[2], 35)
 })
 
 test_that("invalid URL input triggers an error", {