diff --git a/backend/deepcell_label/blueprints.py b/backend/deepcell_label/blueprints.py index f2da822e7..6e6d40211 100644 --- a/backend/deepcell_label/blueprints.py +++ b/backend/deepcell_label/blueprints.py @@ -11,12 +11,19 @@ import requests from flask import Blueprint, abort, current_app, jsonify, request, send_file from werkzeug.exceptions import HTTPException +from deepcell_label.types import BBox +from deepcell_label.utils import generate_onnx_sam_masks, process_image_for_sam, retrieve_sam_model_data from deepcell_label.config import AWS_ACCESS_KEY_ID, AWS_SECRET_ACCESS_KEY, DELETE_TEMP from deepcell_label.export import Export from deepcell_label.label import Edit from deepcell_label.loaders import Loader from deepcell_label.models import Project +import json + + +import cv2 +import numpy as np bp = Blueprint('label', __name__) # pylint: disable=C0103 @@ -46,6 +53,7 @@ def handle_exception(error): @bp.route('/api/project/', methods=['GET']) def get_project(project): start = timeit.default_timer() + print(project) project = Project.get(project) if not project: return abort(404, description=f'project {project} not found') @@ -206,3 +214,62 @@ def submit_project(): timeit.default_timer() - start, ) return {} + +@bp.route('/api/testSamGeneration', methods=['POST']) +def test_sam_generation(): + """Tests the generation of a SAM model. This is a temporary route to test the generation of a SAM model. + + Right now, it takes a single tiff image (example_input_combined.tif in the static folder) and generates + an image embedding (saved as embedding.npy) and an ONNX model (saved as model.onnx) in the static folder. + + With these two artifacts, we are then able to call the next endpoint below (/api/testSamPrediction) to + generate a mask for a given bounding box. + + Generating these two artifacts on a CPU with 8 cores takes about 50 - 60 seconds. On a 10 core GPU, it + takes less than 5 seconds. + + The idea here is to offload this test API endpoint to a worker job that will generate the artifacts and + save them to S3 when a project is created in Deepcell Label. Then, when a user wants to generate a mask + for a given bounding box, we can just load the artifacts from S3 and generate the mask. + + This is a temporary workaround to avoid having to use WebAssembly on the frontend to generate the mask + (streaming the .wasm files were giving us troubles). + """ + json_data = request.get_json() + + process_image_for_sam(json_data["image"], json_data["embedding_output"], json_data["onnx_output"]) + + return {"message": "success"} + +@bp.route('/api/testSamPrediction', methods=['POST']) +def test_sam_prediction(): + """Generates a mask based upon a provided bbox dataset. + + Bbox data should be in the following format: + + { + "x_start": int, + "x_end": int, + "y_start": int, + "y_end": int, + } + + Temporarily, we are just using a static image (example_input_combined.tif). With this image, we are able + to load the embeddings npy file and the ONNX model file to generate a mask for the provided bbox data. + + This DOES NOT require us to re-load the model and call the resource intensive `set_image()` method. + + The output of this endpoint is an ndarray of 0's and 1's indicating where to draw the mask on the frontend. + """ + json_data = json.loads(request.data, strict=False) + bbox = BBox(**json_data) + + image_embedding, ort_session = retrieve_sam_model_data() + + image = cv2.imread('./deepcell_label/static/example_input_combined.tif', cv2.IMREAD_UNCHANGED) + image = cv2.cvtColor(image, cv2.COLOR_GRAY2BGR) + image = image.astype(np.uint8) + + masks = generate_onnx_sam_masks(image_embedding, ort_session, image, bbox) + + return {"data": masks[0].astype(int).tolist()} diff --git a/backend/deepcell_label/label.py b/backend/deepcell_label/label.py index 5cd7c5a56..c9d0a4388 100644 --- a/backend/deepcell_label/label.py +++ b/backend/deepcell_label/label.py @@ -64,6 +64,7 @@ def load(self, labels_zip): """ if not zipfile.is_zipfile(labels_zip): raise ValueError('Attached labels.zip is not a zip file.') + zf = zipfile.ZipFile(labels_zip) # Load edit args diff --git a/backend/deepcell_label/static/example_input_combined.tif b/backend/deepcell_label/static/example_input_combined.tif new file mode 100644 index 000000000..1e3caecdd Binary files /dev/null and b/backend/deepcell_label/static/example_input_combined.tif differ diff --git a/backend/deepcell_label/static/model.onnx b/backend/deepcell_label/static/model.onnx new file mode 100644 index 000000000..b7820fa34 Binary files /dev/null and b/backend/deepcell_label/static/model.onnx differ diff --git a/backend/deepcell_label/types.py b/backend/deepcell_label/types.py new file mode 100644 index 000000000..c5ff543d9 --- /dev/null +++ b/backend/deepcell_label/types.py @@ -0,0 +1,7 @@ +from pydantic import BaseModel + +class BBox(BaseModel): + x_start: int + y_start: int + x_end: int + y_end: int diff --git a/backend/deepcell_label/utils.py b/backend/deepcell_label/utils.py index 4d7e9cd33..d8cb3835f 100644 --- a/backend/deepcell_label/utils.py +++ b/backend/deepcell_label/utils.py @@ -1,6 +1,23 @@ """Utility functions for DeepCell Label""" import numpy as np +from segment_anything import sam_model_registry, SamPredictor +from segment_anything.modeling.sam import Sam +from segment_anything.utils.onnx import SamOnnxModel +from pathlib import Path +import os +import torch + +from onnxruntime.quantization import QuantType +from onnxruntime.quantization.quantize import quantize_dynamic +from typing import Tuple +import onnxruntime + +import cv2 + +from copy import deepcopy + +from deepcell_label.types import BBox def convert_lineage(lineage): @@ -134,3 +151,214 @@ def permute_axes(array, input_axes, output_axes): """ permutation = tuple(input_axes.find(dim) for dim in output_axes) return array.transpose(permutation) + +def _get_sam_checkpoint(model_type: str) -> str: + """Gets the path to a SAM model checkpoint. + + Arguments: + model_type (str): Type of SAM model to load. + + Returns: + str: Path to SAM model checkpoint (local). + """ + weights_urls = { + "default": "https://dl.fbaipublicfiles.com/segment_anything/sam_vit_h_4b8939.pth", + "vit_h": "https://dl.fbaipublicfiles.com/segment_anything/sam_vit_h_4b8939.pth", + "vit_l": "https://dl.fbaipublicfiles.com/segment_anything/sam_vit_l_0b3195.pth", + "vit_b": "https://dl.fbaipublicfiles.com/segment_anything/sam_vit_b_01ec64.pth", + } + + cache_dir = Path.home() / ".cache/sam" + cache_dir.mkdir(parents=True, exist_ok=True) + weight_path = cache_dir / weights_urls[model_type].split("/")[-1] + + return weight_path + +def _get_sam_model(model_type: str) -> Sam: + """Loads a SAM model. + + Arguments: + model_type (str): Type of SAM model to load. + checkpoint_path (str): Path to SAM model checkpoint (local). + + Returns: + Sam: SAM model. + """ + checkpoint_path = _get_sam_checkpoint(model_type) + + return sam_model_registry[model_type](checkpoint=checkpoint_path) + +def _get_preprocess_shape(oldh: int, oldw: int, long_side_length: int) -> Tuple[int, int]: + """ + Compute the output size given input size and target long side length. + """ + scale = long_side_length * 1.0 / max(oldh, oldw) + newh, neww = oldh * scale, oldw * scale + neww = int(neww + 0.5) + newh = int(newh + 0.5) + return (newh, neww) + +def apply_sam_coords(coords: np.ndarray, original_size: Tuple[int, ...]) -> np.ndarray: + """ + Expects a numpy array of length 2 in the final dimension. Requires the + original image size in (H, W) format. + """ + old_h, old_w = original_size + new_h, new_w = _get_preprocess_shape( + original_size[0], original_size[1], 1024 + ) + coords = deepcopy(coords).astype(float) + coords[..., 0] = coords[..., 0] * (new_w / old_w) + coords[..., 1] = coords[..., 1] * (new_h / old_h) + return coords + +def generate_image_embedding(sam_model: Sam, image: np.ndarray, output_path: str) -> None: + """Generates an SamPredictor image embedding and saves it to a file. + + Arguments: + sam_model (Sam): SAM model to generate embedding with. + image (np.ndarray): Image to generate embedding for. + output_path (str): Path to save embedding to. + """ + predictor = SamPredictor(sam_model) + predictor.set_image(image) + + image_embedding = predictor.get_image_embedding().cpu().numpy() + + np.save(output_path, image_embedding) + +def generate_onnx_model(sam_model: Sam, original_image_width: int, original_image_height: int, output_path: str) -> None: + """Generates an ONNX model from a SAM model. + + Arguments: + sam_model (Sam): SAM model to convert to ONNX. + original_image_width (int): Width of the original image. + original_image_height (int): Height of the original image. + output_path (str): Path to save ONNX model to. + """ + onnx_model = SamOnnxModel(sam_model, return_single_mask=True) + + dynamic_axes = { + "point_coords": {1: "num_points"}, + "point_labels": {1: "num_points"}, + } + + embed_dim = sam_model.prompt_encoder.embed_dim + embed_size = sam_model.prompt_encoder.image_embedding_size + mask_input_size = [4 * x for x in embed_size] + dummy_inputs = { + "image_embeddings": torch.randn(1, embed_dim, *embed_size, dtype=torch.float), + "point_coords": torch.randint(low=0, high=1024, size=(1, 5, 2), dtype=torch.float), + "point_labels": torch.randint(low=0, high=4, size=(1, 5), dtype=torch.float), + "mask_input": torch.randn(1, 1, *mask_input_size, dtype=torch.float), + "has_mask_input": torch.tensor([1], dtype=torch.float), + "orig_im_size": torch.tensor([original_image_width, original_image_height], dtype=torch.float), + } + output_names = ["masks", "iou_predictions", "low_res_masks"] + + temp_path = "./deepcell_label/static/tmp.onnx" + + with open(temp_path, "wb") as f: + torch.onnx.export( + onnx_model, + tuple(dummy_inputs.values()), + f, + export_params=True, + verbose=False, + opset_version=17, + do_constant_folding=True, + input_names=list(dummy_inputs.keys()), + output_names=output_names, + dynamic_axes=dynamic_axes, + ) + + quantize_dynamic( + model_input=temp_path, + model_output=output_path, + per_channel=False, + reduce_range=False, + weight_type=QuantType.QUInt8, + ) + + os.remove(temp_path) + +def process_image_for_sam(image_path: str, embedding_output_path: str, onnx_output_path: str) -> None: + """Processes an image for SAM. + + Arguments: + image_path (str): Path to image to process. + embedding_output_path (str): Path to save image embedding to. + onnx_output_path (str): Path to save ONNX model to. + """ + print(image_path) + print(os.getcwd()) + image = cv2.imread(image_path, cv2.IMREAD_UNCHANGED) + image = cv2.cvtColor(image, cv2.COLOR_GRAY2BGR) + image = image.astype(np.uint8) + + sam_model = _get_sam_model("vit_h") + + generate_image_embedding(sam_model, image, embedding_output_path) + + generate_onnx_model(sam_model, image.shape[1], image.shape[0], onnx_output_path) + +def retrieve_sam_model_data() -> Tuple[np.ndarray, onnxruntime.InferenceSession]: + """Retrieves SAM model data; both the image embedding and the ONNX model. + + Returns: + Tuple[np.ndarray, onnxruntime.InferenceSession]: Tuple containing the image embedding and the ONNX model. + + TODO: This should be rewritten to interact with S3 instead of a local static folder. + """ + image_embedding = np.load("./deepcell_label/static/embedding.npy") + ort_session = onnxruntime.InferenceSession("./deepcell_label/static/model.onnx") + + return image_embedding, ort_session + +def generate_onnx_sam_masks( + image_embedding: np.ndarray, + ort_session: onnxruntime.InferenceSession, + image: np.ndarray, + bbox: BBox + ) -> np.ndarray: + """Generates masks from an image embedding and ONNX model. + + Arguments: + image_embedding (np.ndarray): Image embedding to use. + ort_session (onnxruntime.InferenceSession): ONNX model to use. + image (np.ndarray): Image to generate masks for. + bbox (dict): Bounding box to generate masks for. + + Returns: + np.ndarray: Generated masks. For now only one mask is returned. + """ + input_box = np.array([bbox.x_start, bbox.y_start, bbox.x_end, bbox.y_end]) + + # Random for now until I figure out how to remove + input_point = np.array([[0, 0]]) + input_label = np.array([0]) + + onnx_box_coords = input_box.reshape(2, 2) + onnx_box_labels = np.array([2,3]) + + onnx_coord = np.concatenate([input_point, onnx_box_coords], axis=0)[None, :, :] + onnx_label = np.concatenate([input_label, onnx_box_labels], axis=0)[None, :].astype(np.float32) + + onnx_coord = apply_sam_coords(onnx_coord, image.shape[:2]).astype(np.float32) + + onnx_mask_input = np.zeros((1, 1, 256, 256), dtype=np.float32) + onnx_has_mask_input = np.zeros(1, dtype=np.float32) + + ort_inputs = { + "image_embeddings": image_embedding, + "point_coords": onnx_coord, + "point_labels": onnx_label, + "mask_input": onnx_mask_input, + "has_mask_input": onnx_has_mask_input, + "orig_im_size": np.array(image.shape[:2], dtype=np.float32) + } + + masks, _, _ = ort_session.run(None, ort_inputs) + masks = masks > 0.0 + + return masks diff --git a/backend/requirements.txt b/backend/requirements.txt index 4a671ec73..989744b32 100644 --- a/backend/requirements.txt +++ b/backend/requirements.txt @@ -16,3 +16,10 @@ scikit-image~=0.19.0 sqlalchemy~=1.3.24 tifffile imagecodecs +torch==2.1.0 +torchvision==0.16.0 +segment-anything @ git+https://github.com/facebookresearch/segment-anything.git@6fdee8f2727f4506cfbbe553e23b895e27956588 +opencv-python==4.8.1.78 +onnx==1.15.0 +onnxruntime==1.16.1 +pydantic==2.4.2 diff --git a/frontend/package.json b/frontend/package.json index 0d68024e6..d6fadd36c 100644 --- a/frontend/package.json +++ b/frontend/package.json @@ -12,7 +12,7 @@ "@babel/plugin-transform-react-jsx": "^7.16.7", "@emotion/react": "^11.7.1", "@emotion/styled": "^11.6.0", - "@hms-dbmi/viv": "^0.12.6", + "@hms-dbmi/viv": "^0.13.8", "@luma.gl/core": "^8.5.10", "@mui/icons-material": "^5.3.1", "@mui/lab": "^5.0.0-alpha.107", @@ -49,7 +49,9 @@ "lodash.debounce": "^4.0.8", "mathjs": "^11.6.0", "mousetrap": "^1.6.5", + "npyjs": "^0.5.0", "nyc": "^15.1.0", + "onnxruntime-web": "^1.16.1", "plotly.js": "2.12.1", "prop-types": "^15.8.1", "quickselect": "^2.0.0", @@ -102,6 +104,7 @@ "fake-indexeddb": "^3.1.7", "prettier": "^2.3.1", "prettier-plugin-organize-imports": "^2.1.0", + "wasm-loader": "^1.3.0", "worker-loader": "^3.0.8" }, "husky": { diff --git a/frontend/public/sam_onnx_example.onnx b/frontend/public/sam_onnx_example.onnx new file mode 100644 index 000000000..e1e363fc8 Binary files /dev/null and b/frontend/public/sam_onnx_example.onnx differ diff --git a/frontend/public/sam_onnx_quantized_example.onnx b/frontend/public/sam_onnx_quantized_example.onnx new file mode 100644 index 000000000..e493e39bb Binary files /dev/null and b/frontend/public/sam_onnx_quantized_example.onnx differ diff --git a/frontend/src/Project/Canvas/ToolCanvas/SamCanvas.js b/frontend/src/Project/Canvas/ToolCanvas/SamCanvas.js new file mode 100644 index 000000000..832f4782d --- /dev/null +++ b/frontend/src/Project/Canvas/ToolCanvas/SamCanvas.js @@ -0,0 +1,72 @@ +import { useSelector } from '@xstate/react'; +import { useEffect, useRef, useState } from 'react'; +import { useSam, useCanvas } from '../../ProjectContext'; +import "./styles/sam-canvas.css" + +const SamCanvas = () => { + const canvas = useCanvas(); + const width = useSelector(canvas, (state) => state.context.width); + const height = useSelector(canvas, (state) => state.context.height); + const zoom = useSelector(canvas, (state) => state.context.zoom); + const sx = useSelector(canvas, (state) => state.context.sx); + const sy = useSelector(canvas, (state) => state.context.sy); + const ref = useRef(null); + + const sam = useSam(); + + const x = useSelector(sam, (state) => state.context.x); + const y = useSelector(sam, (state) => state.context.y); + const isMouseDown = useSelector(sam, (state) => state.context.isMouseDown); + const startX = useSelector(sam, (state) => state.context.startX); + const startY = useSelector(sam, (state) => state.context.startY); + const endX = useSelector(sam, (state) => state.context.endX); + const endY = useSelector(sam, (state) => state.context.endY); + + const [widthRatio, setWidthRatio] = useState(0) + const [heightRatio, setHeightRatio] = useState(0) + + useEffect(() => { + setWidthRatio((ref.current.offsetWidth / width)) + setHeightRatio((ref.current.offsetHeight / height)) + }, [zoom]) + + useEffect(() => { + // User has selected a region for segmentation + if (!isMouseDown && startX && startY && endX && endY) { + sam.send({ type: 'SEND_TO_API' }) + } + }, [isMouseDown]) + + return
+ {isMouseDown ? ( +
(startY - sy) ? (startY - sy) * heightRatio * zoom : (y - sy) * heightRatio * zoom, + left: (x - sx) < (startX - sx) ? (x - sx) * widthRatio * zoom : (startX - sx) * widthRatio * zoom, + border: "2px dashed red", + zIndex: 999, + width: Math.abs(x - startX) * widthRatio * zoom, + height: Math.abs(y - startY) * heightRatio * zoom, + }}>
+ ) :
+ +
} +
+}; + +export default SamCanvas; diff --git a/frontend/src/Project/Canvas/ToolCanvas/ToolCanvas.js b/frontend/src/Project/Canvas/ToolCanvas/ToolCanvas.js index 7bcb4dd77..c25b7a048 100644 --- a/frontend/src/Project/Canvas/ToolCanvas/ToolCanvas.js +++ b/frontend/src/Project/Canvas/ToolCanvas/ToolCanvas.js @@ -18,6 +18,8 @@ import ReplaceCanvas from './ReplaceCanvas'; import SwapCanvas from './SwapCanvas'; import ThresholdCanvas from './ThresholdCanvas'; import WatershedCanvas from './WatershedCanvas'; +import SamCanvas from './SamCanvas'; +import { useState } from 'react'; function ToolCanvas({ setBitmaps }) { const editSegment = useEditSegment(); @@ -47,6 +49,8 @@ function ToolCanvas({ setBitmaps }) { : false ); + const [runONNX, setRunONNX] = useState(false) + switch (mode) { case 'segment': switch (segmentTool) { @@ -58,6 +62,10 @@ function ToolCanvas({ setBitmaps }) { return ; case 'watershed': return ; + case 'sam': + return <> + + ; default: return null; } diff --git a/frontend/src/Project/Canvas/ToolCanvas/styles/sam-canvas.css b/frontend/src/Project/Canvas/ToolCanvas/styles/sam-canvas.css new file mode 100644 index 000000000..4f0a1ff13 --- /dev/null +++ b/frontend/src/Project/Canvas/ToolCanvas/styles/sam-canvas.css @@ -0,0 +1,20 @@ +.loader { + width: 19px; + height: 19px; + border: 2px solid #FFF; + border-bottom-color: transparent; + border-radius: 50%; + display: inline-block; + box-sizing: border-box; + animation: rotation 1s linear infinite; + display: "block"; + } + + @keyframes rotation { + 0% { + transform: rotate(0deg); + } + 100% { + transform: rotate(360deg); + } + } \ No newline at end of file diff --git a/frontend/src/Project/EditControls/SegmentControls/ToolButtons.js b/frontend/src/Project/EditControls/SegmentControls/ToolButtons.js index 2241af22e..1983e0f2f 100644 --- a/frontend/src/Project/EditControls/SegmentControls/ToolButtons.js +++ b/frontend/src/Project/EditControls/SegmentControls/ToolButtons.js @@ -12,6 +12,7 @@ import SelectButton from './ToolButtons/SelectButton'; import ThresholdButton from './ToolButtons/ThresholdButton'; import TrimButton from './ToolButtons/TrimButton'; import WatershedButton from './ToolButtons/WatershedButton'; +import SegmentAnythingButton from './ToolButtons/SegmentAnythingButton'; function ToolButtons() { const brush = useBrush(); @@ -24,6 +25,7 @@ function ToolButtons() { Tools + diff --git a/frontend/src/Project/EditControls/SegmentControls/ToolButtons/SegmentAnythingButton.js b/frontend/src/Project/EditControls/SegmentControls/ToolButtons/SegmentAnythingButton.js new file mode 100644 index 000000000..541591986 --- /dev/null +++ b/frontend/src/Project/EditControls/SegmentControls/ToolButtons/SegmentAnythingButton.js @@ -0,0 +1,34 @@ +import { useSelector } from '@xstate/react'; +import React, { useCallback } from 'react'; +import { useEditSegmentCopy } from '../../../ProjectContext'; +import ToolButton from './ToolButton'; + +function SegmentAnythingButton(props) { + const segment = useEditSegmentCopy(); + const tool = useSelector(segment, (state) => state.context.tool); + + const onClick = useCallback(() => { + segment.send({ type: 'SET_TOOL', tool: 'sam' }) + }, [segment]); + + const tooltipText = ( + + SAM s + + ); + + return ( + + Segment Anything + + ); +} + +export default SegmentAnythingButton; diff --git a/frontend/src/Project/EditControls/SegmentControls/ToolButtons/TrimButton.js b/frontend/src/Project/EditControls/SegmentControls/ToolButtons/TrimButton.js index aab6c51d5..b2ebd6cd5 100644 --- a/frontend/src/Project/EditControls/SegmentControls/ToolButtons/TrimButton.js +++ b/frontend/src/Project/EditControls/SegmentControls/ToolButtons/TrimButton.js @@ -7,7 +7,9 @@ function TrimButton(props) { const segment = useEditSegment(); const tool = useSelector(segment, (state) => state.context.tool); - const onClick = useCallback(() => segment.send({ type: 'SET_TOOL', tool: 'trim' }), [segment]); + const onClick = useCallback(() => { + segment.send({ type: 'SET_TOOL', tool: 'trim' }) + }, [segment]); const tooltipText = ( diff --git a/frontend/src/Project/ProjectContext.js b/frontend/src/Project/ProjectContext.js index 32b73dcbb..98d213ae7 100644 --- a/frontend/src/Project/ProjectContext.js +++ b/frontend/src/Project/ProjectContext.js @@ -299,6 +299,17 @@ export function useEditSegment() { return segment; } +export function useEditSegmentCopy() { + const project = useProject(); + const segment = useSelector(project, (state) => { + const tool = state.context.toolRef; + const segment = tool.state.context.editSegmentRef; + return segment; + }); + + return segment; +} + export function useBrush() { const project = useProject(); const tool = useSelector(project, (state) => { @@ -310,6 +321,17 @@ export function useBrush() { return tool; } +export function useSam() { + const project = useProject(); + const tool = useSelector(project, (state) => { + const labelMode = state.context.toolRef; + const segment = labelMode.state.context.editSegmentRef; + const tools = segment.state.context.tools; + return tools.sam; + }); + return tool; +} + export function useThreshold() { const project = useProject(); const tool = useSelector(project, (state) => { diff --git a/frontend/src/Project/service/edit/segment/editSegmentMachine.js b/frontend/src/Project/service/edit/segment/editSegmentMachine.js index 465a91c87..23d353a09 100644 --- a/frontend/src/Project/service/edit/segment/editSegmentMachine.js +++ b/frontend/src/Project/service/edit/segment/editSegmentMachine.js @@ -11,13 +11,14 @@ import createSelectMachine from './selectMachine'; import createThresholdMachine from './thresholdMachine'; import createTrimMachine from './trimMachine'; import createWatershedMachine from './watershedMachine'; +import createSAMMachine from './samMachine'; const { pure, respond } = actions; -const colorTools = ['brush', 'select', 'trim', 'flood']; -const grayscaleTools = ['brush', 'select', 'trim', 'flood', 'threshold', 'watershed']; -const panTools = ['select', 'trim', 'flood', 'watershed']; -const noPanTools = ['brush', 'threshold']; +const colorTools = ['brush', 'select', 'trim', 'flood', 'sam']; +const grayscaleTools = ['brush', 'select', 'trim', 'flood', 'threshold', 'watershed', 'sam']; +const panTools = ['select', 'trim', 'flood', 'watershed', 'sam']; +const noPanTools = ['brush', 'threshold', 'sam']; const createEditSegmentMachine = (context) => Machine( @@ -115,10 +116,11 @@ const createEditSegmentMachine = (context) => }, actions: { setSelected: assign({ selected: (_, evt) => evt.selected }), - setTool: pure((ctx, evt) => [ - send('EXIT', { to: ctx.tools[ctx.tool] }), - assign({ tool: evt.tool }), - ]), + setTool: pure((ctx, evt) => { + return [ + send('EXIT', { to: ctx.tools[ctx.tool] }), + assign({ tool: evt.tool }), + ]}), setPanOnDragTrue: sendParent({ type: 'SET_PAN_ON_DRAG', panOnDrag: true }), setPanOnDragFalse: sendParent({ type: 'SET_PAN_ON_DRAG', panOnDrag: false }), save: respond((ctx) => ({ type: 'RESTORE', tool: ctx.tool })), @@ -131,6 +133,7 @@ const createEditSegmentMachine = (context) => trim: spawn(createTrimMachine(ctx)), flood: spawn(createFloodMachine(ctx)), watershed: spawn(createWatershedMachine(ctx)), + sam: spawn(createSAMMachine(ctx)) }), }), forwardToTool: forwardTo((ctx) => ctx.tools[ctx.tool]), diff --git a/frontend/src/Project/service/edit/segment/samMachine.js b/frontend/src/Project/service/edit/segment/samMachine.js new file mode 100644 index 000000000..b70b11bb0 --- /dev/null +++ b/frontend/src/Project/service/edit/segment/samMachine.js @@ -0,0 +1,79 @@ +/** Manages using the brush tool. */ +import { assign, Machine, send } from 'xstate'; +import { fromEventBus } from '../../eventBus'; + +const createSAMMachine = (context) => +Machine( + { + invoke: [ + { src: fromEventBus('watershed', () => context.eventBuses.canvas, 'COORDINATES') }, + { id: 'arrays', src: fromEventBus('sam', () => context.eventBuses.arrays, ['EDITED_SEGMENT']) }, + ], + context: { + isMouseDown: false, + startX: null, + startY: null, + endX: null, + endY: null, + x: 0, + y: 0, + }, + initial: 'idle', + states: { + idle: { + on: { + mousedown: { target: 'dragging', actions: ['setStartCoordinates', 'setMouseIsDown'] }, + }, + }, + dragging: { + on: { + EXIT: 'idle', + COORDINATES: { actions: ['setCoordinates'] }, + mouseup: { target: 'waiting', actions: ['setMouseIsNotDown', 'setEndCoordinates'] }, + }, + }, + waiting: { + on: { + CLEAR_SELECTION: { target: 'done', actions: ['clearSelection']}, + SEND_TO_API: {target: "fetching", actions: ["sendToAPI"]} + }, + }, + fetching: { + on: { + EDITED_SEGMENT: { target: 'done', actions: ['clearSelection'] }, + } + }, + done: { + always: 'idle', + }, + }, + on: { + COORDINATES: { actions: 'setCoordinates' }, + }, + }, + { + actions: { + setCoordinates: assign({ x: (_, { x }) => x, y: (_, { y }) => y }), + setStartCoordinates: assign({ startX: (ctx) => ctx.x, startY: (ctx) => ctx.y }), + setEndCoordinates: assign({ endX: (ctx) => ctx.x, endY: (ctx) => ctx.y }), + setMouseIsDown: assign({ isMouseDown: true }), + setMouseIsNotDown: assign({ isMouseDown: false }), + clearSelection: assign({ startX: null, startY: null, endX: null, endY: null, isMouseDown: false, x: 0, y: 0 }), + sendToAPI: send( + (ctx) => ({ + type: 'EDIT', + action: 'sam', + args: { + x_start: ctx.startX, + y_start: ctx.startY, + x_end: ctx.endX, + y_end: ctx.endY, + }, + }), + { to: 'arrays' } + ), + }, + } + ); + +export default createSAMMachine; diff --git a/frontend/src/Project/service/labels/segmentApiMachine.js b/frontend/src/Project/service/labels/segmentApiMachine.js index f57100e68..9636db676 100644 --- a/frontend/src/Project/service/labels/segmentApiMachine.js +++ b/frontend/src/Project/service/labels/segmentApiMachine.js @@ -40,22 +40,41 @@ async function makeEditZip(context, event) { return zipBlob; } -/** Sends a label zip to the DeepCell Label API to edit. */ -async function edit(context, event) { - const form = new FormData(); - const zipBlob = await makeEditZip(context, event); - form.append('labels', zipBlob, 'labels.zip'); - const width = context.labeled[0].length; - const height = context.labeled.length; - +async function testSamPrediction(context, event) { const options = { method: 'POST', - body: form, - 'Content-Type': 'multipart/form-data', + body: JSON.stringify(event.args), + 'Content-Type': 'application/json', }; - return fetch(`${document.location.origin}/api/edit`, options) + return fetch(`${document.location.origin}/api/testSamPrediction`, options) .then(checkResponseCode) - .then((res) => parseResponseZip(res, width, height)); + .then((res) => res.json()) + .then((data) => { + return { labeled: data.data[0], cells: context.cells} + }) +} + +/** Sends a label zip to the DeepCell Label API to edit. */ +async function edit(context, event) { + + if (event.action === "sam") { + return testSamPrediction(context, event) + } else { + const form = new FormData(); + const zipBlob = await makeEditZip(context, event); + form.append('labels', zipBlob, 'labels.zip'); + const width = context.labeled[0].length; + const height = context.labeled.length; + + const options = { + method: 'POST', + body: form, + 'Content-Type': 'multipart/form-data', + }; + return fetch(`${document.location.origin}/api/edit`, options) + .then(checkResponseCode) + .then((res) => parseResponseZip(res, width, height)); + } } function checkResponseCode(response) { diff --git a/frontend/yarn.lock b/frontend/yarn.lock index d3b54c15c..a01a5569d 100644 --- a/frontend/yarn.lock +++ b/frontend/yarn.lock @@ -4,7 +4,7 @@ "@ampproject/remapping@^2.1.0": version "2.2.0" - resolved "https://registry.yarnpkg.com/@ampproject/remapping/-/remapping-2.2.0.tgz#56c133824780de3174aed5ab6834f3026790154d" + resolved "https://registry.npmjs.org/@ampproject/remapping/-/remapping-2.2.0.tgz" integrity sha512-qRmjj8nj9qmLTQXXmaR1cck3UXSRMPrbsLJAasZpF+t3riI71BXed5ebIOYwQntykeZuhjsdweEc9BxH5Jc26w== dependencies: "@jridgewell/gen-mapping" "^0.1.0" @@ -12,40 +12,45 @@ "@apideck/better-ajv-errors@^0.3.1": version "0.3.3" - resolved "https://registry.yarnpkg.com/@apideck/better-ajv-errors/-/better-ajv-errors-0.3.3.tgz#ab0b1e981e1749bf59736cf7ebe25cfc9f949c15" + resolved "https://registry.npmjs.org/@apideck/better-ajv-errors/-/better-ajv-errors-0.3.3.tgz" integrity sha512-9o+HO2MbJhJHjDYZaDxJmSDckvDpiuItEsrIShV0DXeCshXWRHhqYyU/PKHMkuClOmFnZhRd6wzv4vpDu/dRKg== dependencies: json-schema "^0.4.0" jsonpointer "^5.0.0" leven "^3.1.0" -"@babel/code-frame@^7.0.0", "@babel/code-frame@^7.10.4", "@babel/code-frame@^7.12.13", "@babel/code-frame@^7.16.0", "@babel/code-frame@^7.8.3": +"@babel/code-frame@^7.0.0", "@babel/code-frame@^7.0.0-beta.36", "@babel/code-frame@^7.10.4", "@babel/code-frame@^7.12.13", "@babel/code-frame@^7.16.0", "@babel/code-frame@^7.8.3": version "7.16.7" - 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resolved "https://registry.yarnpkg.com/@babel/core/-/core-7.17.5.tgz#6cd2e836058c28f06a4ca8ee7ed955bbf37c8225" + resolved "https://registry.npmjs.org/@babel/core/-/core-7.17.5.tgz" integrity sha512-/BBMw4EvjmyquN5O+t5eh0+YqB3XXJkYD2cjKpYtWOfFy4lQ4UozNSmxAcWT8r2XtZs0ewG+zrfsqeR15i1ajA== dependencies: "@ampproject/remapping" "^2.1.0" @@ -66,7 +71,7 @@ "@babel/core@^7.7.5": version "7.18.6" - resolved "https://registry.yarnpkg.com/@babel/core/-/core-7.18.6.tgz#54a107a3c298aee3fe5e1947a6464b9b6faca03d" + resolved "https://registry.npmjs.org/@babel/core/-/core-7.18.6.tgz" integrity sha512-cQbWBpxcbbs/IUredIPkHiAGULLV8iwgNRMFzvbhEXISp4f3rUUXE5+TIw6KwUWUR3DwyI6gmBRnmAtYaWehwQ== dependencies: "@ampproject/remapping" "^2.1.0" @@ -87,7 +92,7 @@ "@babel/eslint-parser@^7.16.3": version "7.17.0" - resolved "https://registry.yarnpkg.com/@babel/eslint-parser/-/eslint-parser-7.17.0.tgz#eabb24ad9f0afa80e5849f8240d0e5facc2d90d6" + resolved "https://registry.npmjs.org/@babel/eslint-parser/-/eslint-parser-7.17.0.tgz" integrity sha512-PUEJ7ZBXbRkbq3qqM/jZ2nIuakUBqCYc7Qf52Lj7dlZ6zERnqisdHioL0l4wwQZnmskMeasqUNzLBFKs3nylXA== dependencies: eslint-scope "^5.1.1" @@ -96,7 +101,7 @@ "@babel/generator@^7.17.3", "@babel/generator@^7.18.6": version "7.18.7" - resolved "https://registry.yarnpkg.com/@babel/generator/-/generator-7.18.7.tgz#2aa78da3c05aadfc82dbac16c99552fc802284bd" + resolved "https://registry.npmjs.org/@babel/generator/-/generator-7.18.7.tgz" integrity sha512-shck+7VLlY72a2w9c3zYWuE1pwOKEiQHV7GTUbSnhyl5eu3i04t30tBY82ZRWrDfo3gkakCFtevExnxbkf2a3A== dependencies: "@babel/types" "^7.18.7" @@ -105,7 +110,7 @@ "@babel/generator@^7.7.2": version "7.17.3" - resolved "https://registry.yarnpkg.com/@babel/generator/-/generator-7.17.3.tgz#a2c30b0c4f89858cb87050c3ffdfd36bdf443200" + resolved "https://registry.npmjs.org/@babel/generator/-/generator-7.17.3.tgz" integrity sha512-+R6Dctil/MgUsZsZAkYgK+ADNSZzJRRy0TvY65T71z/CR854xHQ1EweBYXdfT+HNeN7w0cSJJEzgxZMv40pxsg== dependencies: "@babel/types" "^7.17.0" @@ -114,14 +119,14 @@ "@babel/helper-annotate-as-pure@^7.16.7": version "7.16.7" - resolved "https://registry.yarnpkg.com/@babel/helper-annotate-as-pure/-/helper-annotate-as-pure-7.16.7.tgz#bb2339a7534a9c128e3102024c60760a3a7f3862" + resolved "https://registry.npmjs.org/@babel/helper-annotate-as-pure/-/helper-annotate-as-pure-7.16.7.tgz" integrity sha512-s6t2w/IPQVTAET1HitoowRGXooX8mCgtuP5195wD/QJPV6wYjpujCGF7JuMODVX2ZAJOf1GT6DT9MHEZvLOFSw== dependencies: "@babel/types" "^7.16.7" "@babel/helper-builder-binary-assignment-operator-visitor@^7.16.7": version "7.16.7" - 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resolved "https://registry.yarnpkg.com/@babel/plugin-transform-modules-umd/-/plugin-transform-modules-umd-7.16.7.tgz#23dad479fa585283dbd22215bff12719171e7618" + resolved "https://registry.npmjs.org/@babel/plugin-transform-modules-umd/-/plugin-transform-modules-umd-7.16.7.tgz" integrity sha512-EMh7uolsC8O4xhudF2F6wedbSHm1HHZ0C6aJ7K67zcDNidMzVcxWdGr+htW9n21klm+bOn+Rx4CBsAntZd3rEQ== dependencies: "@babel/helper-module-transforms" "^7.16.7" @@ -799,21 +816,21 @@ "@babel/plugin-transform-named-capturing-groups-regex@^7.16.8": version "7.16.8" - resolved "https://registry.yarnpkg.com/@babel/plugin-transform-named-capturing-groups-regex/-/plugin-transform-named-capturing-groups-regex-7.16.8.tgz#7f860e0e40d844a02c9dcf9d84965e7dfd666252" + resolved "https://registry.npmjs.org/@babel/plugin-transform-named-capturing-groups-regex/-/plugin-transform-named-capturing-groups-regex-7.16.8.tgz" integrity sha512-j3Jw+n5PvpmhRR+mrgIh04puSANCk/T/UA3m3P1MjJkhlK906+ApHhDIqBQDdOgL/r1UYpz4GNclTXxyZrYGSw== dependencies: "@babel/helper-create-regexp-features-plugin" "^7.16.7" "@babel/plugin-transform-new-target@^7.16.7": version "7.16.7" - 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resolved "https://registry.yarnpkg.com/@turf/area/-/area-6.5.0.tgz#1d0d7aee01d8a4a3d4c91663ed35cc615f36ad56" + resolved "https://registry.npmjs.org/@turf/area/-/area-6.5.0.tgz" integrity sha512-xCZdiuojokLbQ+29qR6qoMD89hv+JAgWjLrwSEWL+3JV8IXKeNFl6XkEJz9HGkVpnXvQKJoRz4/liT+8ZZ5Jyg== dependencies: "@turf/helpers" "^6.5.0" @@ -2707,7 +3032,7 @@ "@turf/bbox@^6.4.0": version "6.5.0" - resolved "https://registry.yarnpkg.com/@turf/bbox/-/bbox-6.5.0.tgz#bec30a744019eae420dac9ea46fb75caa44d8dc5" + resolved "https://registry.npmjs.org/@turf/bbox/-/bbox-6.5.0.tgz" integrity sha512-RBbLaao5hXTYyyg577iuMtDB8ehxMlUqHEJiMs8jT1GHkFhr6sYre3lmLsPeYEi/ZKj5TP5tt7fkzNdJ4GIVyw== dependencies: "@turf/helpers" "^6.5.0" @@ -2715,7 +3040,7 @@ "@turf/centroid@^6.0.2": version "6.5.0" - resolved "https://registry.yarnpkg.com/@turf/centroid/-/centroid-6.5.0.tgz#ecaa365412e5a4d595bb448e7dcdacfb49eb0009" + resolved "https://registry.npmjs.org/@turf/centroid/-/centroid-6.5.0.tgz" integrity sha512-MwE1oq5E3isewPprEClbfU5pXljIK/GUOMbn22UM3IFPDJX0KeoyLNwghszkdmFp/qMGL/M13MMWvU+GNLXP/A== dependencies: "@turf/helpers" "^6.5.0" @@ -2723,24 +3048,24 @@ "@turf/helpers@^6.5.0": version "6.5.0" - resolved "https://registry.yarnpkg.com/@turf/helpers/-/helpers-6.5.0.tgz#f79af094bd6b8ce7ed2bd3e089a8493ee6cae82e" + resolved "https://registry.npmjs.org/@turf/helpers/-/helpers-6.5.0.tgz" integrity sha512-VbI1dV5bLFzohYYdgqwikdMVpe7pJ9X3E+dlr425wa2/sMJqYDhTO++ec38/pcPvPE6oD9WEEeU3Xu3gza+VPw== "@turf/meta@^6.5.0": version "6.5.0" - resolved "https://registry.yarnpkg.com/@turf/meta/-/meta-6.5.0.tgz#b725c3653c9f432133eaa04d3421f7e51e0418ca" + resolved "https://registry.npmjs.org/@turf/meta/-/meta-6.5.0.tgz" integrity sha512-RrArvtsV0vdsCBegoBtOalgdSOfkBrTJ07VkpiCnq/491W67hnMWmDu7e6Ztw0C3WldRYTXkg3SumfdzZxLBHA== dependencies: "@turf/helpers" "^6.5.0" "@types/aria-query@^4.2.0": version "4.2.2" - resolved "https://registry.yarnpkg.com/@types/aria-query/-/aria-query-4.2.2.tgz#ed4e0ad92306a704f9fb132a0cfcf77486dbe2bc" + resolved "https://registry.npmjs.org/@types/aria-query/-/aria-query-4.2.2.tgz" integrity sha512-HnYpAE1Y6kRyKM/XkEuiRQhTHvkzMBurTHnpFLYLBGPIylZNPs9jJcuOOYWxPLJCSEtmZT0Y8rHDokKN7rRTig== -"@types/babel__core@^7.0.0", "@types/babel__core@^7.1.14": +"@types/babel__core@^7.0.0", "@types/babel__core@^7.1.14", "@types/babel__core@^7.1.9": version "7.1.18" - 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resolved "https://registry.yarnpkg.com/@types/babel__traverse/-/babel__traverse-7.14.2.tgz#ffcd470bbb3f8bf30481678fb5502278ca833a43" + resolved "https://registry.npmjs.org/@types/babel__traverse/-/babel__traverse-7.14.2.tgz" integrity sha512-K2waXdXBi2302XUdcHcR1jCeU0LL4TD9HRs/gk0N2Xvrht+G/BfJa4QObBQZfhMdxiCpV3COl5Nfq4uKTeTnJA== dependencies: "@babel/types" "^7.3.0" "@types/body-parser@*": version "1.19.2" - resolved "https://registry.yarnpkg.com/@types/body-parser/-/body-parser-1.19.2.tgz#aea2059e28b7658639081347ac4fab3de166e6f0" + resolved "https://registry.npmjs.org/@types/body-parser/-/body-parser-1.19.2.tgz" integrity sha512-ALYone6pm6QmwZoAgeyNksccT9Q4AWZQ6PvfwR37GT6r6FWUPguq6sUmNGSMV2Wr761oQoBxwGGa6DR5o1DC9g== dependencies: "@types/connect" "*" @@ -2781,19 +3106,19 @@ "@types/bonjour@^3.5.9": version "3.5.10" - resolved "https://registry.yarnpkg.com/@types/bonjour/-/bonjour-3.5.10.tgz#0f6aadfe00ea414edc86f5d106357cda9701e275" + resolved "https://registry.npmjs.org/@types/bonjour/-/bonjour-3.5.10.tgz" integrity sha512-p7ienRMiS41Nu2/igbJxxLDWrSZ0WxM8UQgCeO9KhoVF7cOVFkrKsiDr1EsJIla8vV3oEEjGcz11jc5yimhzZw== dependencies: "@types/node" "*" "@types/colormap@^2.3.1": version "2.3.1" - resolved "https://registry.yarnpkg.com/@types/colormap/-/colormap-2.3.1.tgz#2b1d63f58ba541b81b99ad0b743cece7c0ff5f67" + resolved "https://registry.npmjs.org/@types/colormap/-/colormap-2.3.1.tgz" integrity sha512-GCPa0VCih4kp/TPPkjdjgUG19yCOPbpP9UpjEYTxUnIhaNqMrhlL9wSAyxm0cRfSubT3KUETZ+8vXYn6fmq0OQ== "@types/connect-history-api-fallback@^1.3.5": version "1.3.5" - resolved "https://registry.yarnpkg.com/@types/connect-history-api-fallback/-/connect-history-api-fallback-1.3.5.tgz#d1f7a8a09d0ed5a57aee5ae9c18ab9b803205dae" + resolved "https://registry.npmjs.org/@types/connect-history-api-fallback/-/connect-history-api-fallback-1.3.5.tgz" integrity sha512-h8QJa8xSb1WD4fpKBDcATDNGXghFj6/3GRWG6dhmRcu0RX1Ubasur2Uvx5aeEwlf0MwblEC2bMzzMQntxnw/Cw== dependencies: "@types/express-serve-static-core" "*" @@ -2801,14 +3126,14 @@ "@types/connect@*": version "3.4.35" - resolved "https://registry.yarnpkg.com/@types/connect/-/connect-3.4.35.tgz#5fcf6ae445e4021d1fc2219a4873cc73a3bb2ad1" + resolved "https://registry.npmjs.org/@types/connect/-/connect-3.4.35.tgz" integrity sha512-cdeYyv4KWoEgpBISTxWvqYsVy444DOqehiF3fM3ne10AmJ62RSyNkUnxMJXHQWRQQX2eR94m5y1IZyDwBjV9FQ== dependencies: "@types/node" "*" "@types/eslint-scope@^3.7.3": version "3.7.3" - 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resolved "https://registry.yarnpkg.com/jest-snapshot/-/jest-snapshot-27.5.1.tgz#b668d50d23d38054a51b42c4039cab59ae6eb6a1" + resolved "https://registry.npmjs.org/jest-snapshot/-/jest-snapshot-27.5.1.tgz" integrity sha512-yYykXI5a0I31xX67mgeLw1DZ0bJB+gpq5IpSuCAoyDi0+BhgU/RIrL+RTzDmkNTchvDFWKP8lp+w/42Z3us5sA== dependencies: "@babel/core" "^7.7.2" @@ -8622,7 +9194,7 @@ jest-snapshot@^27.5.1: jest-util@^27.5.1: version "27.5.1" - resolved "https://registry.yarnpkg.com/jest-util/-/jest-util-27.5.1.tgz#3ba9771e8e31a0b85da48fe0b0891fb86c01c2f9" + resolved "https://registry.npmjs.org/jest-util/-/jest-util-27.5.1.tgz" integrity sha512-Kv2o/8jNvX1MQ0KGtw480E/w4fBCDOnH6+6DmeKi6LZUIlKA5kwY0YNdlzaWTiVgxqAqik11QyxDOKk543aKXw== dependencies: "@jest/types" "^27.5.1" @@ -8634,7 +9206,7 @@ jest-util@^27.5.1: jest-validate@^27.5.1: version "27.5.1" - resolved "https://registry.yarnpkg.com/jest-validate/-/jest-validate-27.5.1.tgz#9197d54dc0bdb52260b8db40b46ae668e04df067" + resolved "https://registry.npmjs.org/jest-validate/-/jest-validate-27.5.1.tgz" integrity sha512-thkNli0LYTmOI1tDB3FI1S1RTp/Bqyd9pTarJwL87OIBFuqEb5Apv5EaApEudYg4g86e3CT6kM0RowkhtEnCBQ== dependencies: "@jest/types" "^27.5.1" @@ -8646,7 +9218,7 @@ jest-validate@^27.5.1: jest-watch-typeahead@^1.0.0: version "1.0.0" - resolved "https://registry.yarnpkg.com/jest-watch-typeahead/-/jest-watch-typeahead-1.0.0.tgz#4de2ca1eb596acb1889752afbab84b74fcd99173" + resolved "https://registry.npmjs.org/jest-watch-typeahead/-/jest-watch-typeahead-1.0.0.tgz" integrity sha512-jxoszalAb394WElmiJTFBMzie/RDCF+W7Q29n5LzOPtcoQoHWfdUtHFkbhgf5NwWe8uMOxvKb/g7ea7CshfkTw== dependencies: ansi-escapes "^4.3.1" @@ -8659,7 +9231,7 @@ jest-watch-typeahead@^1.0.0: jest-watcher@^27.0.0, jest-watcher@^27.5.1: version "27.5.1" - resolved "https://registry.yarnpkg.com/jest-watcher/-/jest-watcher-27.5.1.tgz#71bd85fb9bde3a2c2ec4dc353437971c43c642a2" + resolved "https://registry.npmjs.org/jest-watcher/-/jest-watcher-27.5.1.tgz" integrity sha512-z676SuD6Z8o8qbmEGhoEUFOM1+jfEiL3DXHK/xgEiG2EyNYfFG60jluWcupY6dATjfEsKQuibReS1djInQnoVw== dependencies: "@jest/test-result" "^27.5.1" @@ -8672,7 +9244,7 @@ jest-watcher@^27.0.0, jest-watcher@^27.5.1: jest-worker@^26.2.1: version "26.6.2" - resolved "https://registry.yarnpkg.com/jest-worker/-/jest-worker-26.6.2.tgz#7f72cbc4d643c365e27b9fd775f9d0eaa9c7a8ed" + resolved "https://registry.npmjs.org/jest-worker/-/jest-worker-26.6.2.tgz" integrity sha512-KWYVV1c4i+jbMpaBC+U++4Va0cp8OisU185o73T1vo99hqi7w8tSJfUXYswwqqrjzwxa6KpRK54WhPvwf5w6PQ== dependencies: "@types/node" "*" @@ -8681,16 +9253,16 @@ jest-worker@^26.2.1: jest-worker@^27.0.2, jest-worker@^27.3.1, jest-worker@^27.4.5, jest-worker@^27.5.1: version "27.5.1" - resolved "https://registry.yarnpkg.com/jest-worker/-/jest-worker-27.5.1.tgz#8d146f0900e8973b106b6f73cc1e9a8cb86f8db0" + resolved "https://registry.npmjs.org/jest-worker/-/jest-worker-27.5.1.tgz" integrity sha512-7vuh85V5cdDofPyxn58nrPjBktZo0u9x1g8WtjQol+jZDaE+fhN+cIvTj11GndBnMnyfrUOG1sZQxCdjKh+DKg== dependencies: "@types/node" "*" merge-stream "^2.0.0" supports-color "^8.0.0" -jest@^27.4.3: +jest@^27.0.0, jest@^27.4.3: version "27.5.1" - resolved "https://registry.yarnpkg.com/jest/-/jest-27.5.1.tgz#dadf33ba70a779be7a6fc33015843b51494f63fc" + resolved "https://registry.npmjs.org/jest/-/jest-27.5.1.tgz" integrity sha512-Yn0mADZB89zTtjkPJEXwrac3LHudkQMR+Paqa8uxJHCBr9agxztUifWCyiYrjhMPBoUVBjyny0I7XH6ozDr7QQ== dependencies: "@jest/core" "^27.5.1" @@ -8699,12 +9271,12 @@ jest@^27.4.3: "js-tokens@^3.0.0 || ^4.0.0", js-tokens@^4.0.0: version "4.0.0" - resolved "https://registry.yarnpkg.com/js-tokens/-/js-tokens-4.0.0.tgz#19203fb59991df98e3a287050d4647cdeaf32499" + resolved "https://registry.npmjs.org/js-tokens/-/js-tokens-4.0.0.tgz" integrity sha512-RdJUflcE3cUzKiMqQgsCu06FPu9UdIJO0beYbPhHN4k6apgJtifcoCtT9bcxOpYBtpD2kCM6Sbzg4CausW/PKQ== -js-yaml@3.14.1, js-yaml@^3.13.1: +js-yaml@^3.13.1, js-yaml@3.14.1: version "3.14.1" - resolved "https://registry.yarnpkg.com/js-yaml/-/js-yaml-3.14.1.tgz#dae812fdb3825fa306609a8717383c50c36a0537" + resolved "https://registry.npmjs.org/js-yaml/-/js-yaml-3.14.1.tgz" integrity sha512-okMH7OXXJ7YrN9Ok3/SXrnu4iX9yOk+25nqX4imS2npuvTYDmo/QEZoqwZkYaIDk3jVvBOTOIEgEhaLOynBS9g== dependencies: argparse "^1.0.7" @@ -8712,19 +9284,19 @@ js-yaml@3.14.1, js-yaml@^3.13.1: js-yaml@^4.1.0: version "4.1.0" - resolved "https://registry.yarnpkg.com/js-yaml/-/js-yaml-4.1.0.tgz#c1fb65f8f5017901cdd2c951864ba18458a10602" + resolved "https://registry.npmjs.org/js-yaml/-/js-yaml-4.1.0.tgz" integrity sha512-wpxZs9NoxZaJESJGIZTyDEaYpl0FKSA+FB9aJiyemKhMwkxQg63h4T1KJgUGHpTqPDNRcmmYLugrRjJlBtWvRA== dependencies: argparse "^2.0.1" jsbn@~0.1.0: version "0.1.1" - resolved "https://registry.yarnpkg.com/jsbn/-/jsbn-0.1.1.tgz#a5e654c2e5a2deb5f201d96cefbca80c0ef2f513" + resolved "https://registry.npmjs.org/jsbn/-/jsbn-0.1.1.tgz" integrity sha1-peZUwuWi3rXyAdls77yoDA7y9RM= jsdom@^16.6.0: version "16.7.0" - resolved "https://registry.yarnpkg.com/jsdom/-/jsdom-16.7.0.tgz#918ae71965424b197c819f8183a754e18977b710" + resolved "https://registry.npmjs.org/jsdom/-/jsdom-16.7.0.tgz" integrity sha512-u9Smc2G1USStM+s/x1ru5Sxrl6mPYCbByG1U/hUmqaVsm4tbNyS7CicOSRyuGQYZhTu0h84qkZZQ/I+dzizSVw== dependencies: abab "^2.0.5" @@ -8757,64 +9329,64 @@ jsdom@^16.6.0: jsep@^0.3.0: version "0.3.5" - 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