{exploreHTP}

{exploreHTP} is an R Shiny application designed to support the processing and analysis of high-throughput phenotyping data obtained from UAV imagery.

Installation

You can install the development version of {exploreHTP} from GitHub using:

# install.packages("pak")
pak::pkg_install("AparicioJohan/exploreHTP")

Video tutorials

Step-by-step video tutorials are available on the UW Potato Breeding YouTube channel.

Image Analysis playlist

Watch the complete tutorial series in the Image Analysis playlist.

Available tutorials

1. Installing exploreHTP for UAV imagery analysis

2. Extracting ground cover and plant height with exploreHTP

3. Estimating emergence time and time to canopy closure

4. Extracting NDVI from multispectral UAV imagery with exploreHTP

5. Estimating senescence time using the GLI vegetation index

Additional tutorials will be added to the playlist as they become available.

Run

You can launch the application by running:

library(exploreHTP)
run_app()

Getting help and reporting issues

Questions, bug reports, feature requests, and suggestions are welcome through the GitHub Issues page.

Before submitting a new issue:

1. Search the existing issues to check whether the problem has already been reported.
2. Confirm that you are using the most recent version of {exploreHTP}.
3. Restart R and verify that the problem can be reproduced.
4. Prepare a small reproducible example whenever possible.

Browse existing issues

Submit a new issue

About

You are reading the documentation for version: 1.0.0

This README was compiled on:

Sys.time()
#> [1] "2026-08-07 14:58:04 CDT"