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BU-ISCIII

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  1. plasmidID plasmidID Public

    PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

    Shell 44 10

  2. viralrecon viralrecon Public

    Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    Nextflow 1 5

  3. iskylims iskylims Public

    is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

    Python 96 44

  4. buisciii-tools buisciii-tools Public

    set of helper tools for bu-isciii management of its core services portfolio.

    Python 4 19

  5. BU-ISCIII BU-ISCIII Public

    Our Wiki and main public documentation repository.

    7 11

  6. taranys taranys Public

    cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.

    Jupyter Notebook 9 6

Repositories

Showing 10 of 86 repositories
  • introduction_to_hpc Public

    In this training course you will find theory and practice material for introducing yourself to the basics of high-performance computing (HPC) environment.

    BU-ISCIII/introduction_to_hpc's past year of commit activity
    HTML 3 GPL-3.0 4 0 0 Updated Oct 19, 2026
  • relecov-platform Public

    genomic surveillance web platform for respiratory viruses used by RELECOV network in Spain

    BU-ISCIII/relecov-platform's past year of commit activity
    Python 1 GPL-3.0 11 4 4 Updated Oct 19, 2026
  • buisciii-deployment-standards Public

    BU-ISCIII deployment standards, reusable templates, and tooling for consistent containerized application deployments with Docker and Podman.

    BU-ISCIII/buisciii-deployment-standards's past year of commit activity
    Shell 0 3 3 0 Updated Oct 19, 2026
  • iskylims Public

    is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

    BU-ISCIII/iskylims's past year of commit activity
    Python 96 GPL-3.0 44 18 0 Updated Oct 19, 2026
  • buisciii-tools Public

    set of helper tools for bu-isciii management of its core services portfolio.

    BU-ISCIII/buisciii-tools's past year of commit activity
    Python 4 GPL-3.0 19 11 1 Updated Oct 16, 2026
  • viralrecon Public Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    BU-ISCIII/viralrecon's past year of commit activity
    Nextflow 1 MIT 161 0 0 Updated Oct 16, 2026
  • mepram-omop-api Public

    Core API for managing and serving data for the OMOP dashboard for the MEPRAM project.

    BU-ISCIII/mepram-omop-api's past year of commit activity
    Shell 0 GPL-3.0 2 0 0 Updated Oct 16, 2026
  • beacon2-pi-api Public Forked from EGA-archive/beacon2-pi-api

    Beacon v2 Production Implementation (API)

    BU-ISCIII/beacon2-pi-api's past year of commit activity
    Python 0 Apache-2.0 18 0 0 Updated Oct 15, 2026
  • impact-tools Public

    Set of tools for pre-processing and ingestion of WGS Go-IMPaCT data into EGA and AF Beacon

    BU-ISCIII/impact-tools's past year of commit activity
    0 MIT 2 0 0 Updated Oct 14, 2026
  • BU-ISCIII Public

    Our Wiki and main public documentation repository.

    BU-ISCIII/BU-ISCIII's past year of commit activity
    7 11 4 1 Updated Sep 29, 2026
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