Issues

• GenerateWalksMC silently drops duplicate walk entries, and nobody knows how often

  needs-info
  CAST-genomics/PangenomeAPI#76 · Filter by author turner opened on Sep 2, 2026

• Drop the d3 dependency, and the dead read-track colouring that is its last user

  needs-triage
  CAST-genomics/PangenomeAPI#58 · Filter by author turner opened on Aug 31, 2026
  

• Two concurrent requests for the same uncached region both extract it, over each other

  needs-triage
  CAST-genomics/PangenomeAPI#54 · Filter by author turner opened on Aug 28, 2026

• A reversal draws shapes pgb refuses, and it refuses the whole document

  needs-triage
  CAST-genomics/PangenomeAPI#52 · Filter by author turner opened on Aug 28, 2026

• Stop round-tripping pipeline intermediates through disk

  ready-for-agent
  CAST-genomics/PangenomeAPI#27 · Filter by author turner opened on Aug 27, 2026

• Produce graph JSON in-process, deleting the vg round trip

  ready-for-agent
  CAST-genomics/PangenomeAPI#26 · Filter by author turner opened on Aug 27, 2026