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# FunVIP [![DOI](https://zenodo.org/badge/588465720.svg)](https://zenodo.org/doi/10.5281/zenodo.10714946)


FunVIP is now published please cite:
#### Seo CW, Yoo S, Cho Y, Kim JS, Steinegger M, Lim YW. FunVIP: Fungal Validation and Identification Pipeline based on phylogenetic analysis. J. Microbiol. 2025;63(4):e2411017. [Link](https://jmicrobiol.or.kr/journal/view.php?doi=10.71150/jm.2411017)
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#### Seo CW, Yoo S, Cho Y, Kim JS, Steinegger M, Lim YW. FunVIP: Fungal Validation and Identification Pipeline based on phylogenetic analysis. J. Microbiol. 2025;63(4):e2411017. [Link](https://jmicrobiol.or.kr/journal/view.php?doi=10.71150/jm.2411017)<br><br/>

### **Fun**gal **V**alidation & **I**dentification **P**ipeline
#### An automatic tree-based sequence identification and validation pipeline for fungal (or maybe other) species
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## Scheduling
1. ~~Beta release part 1 (2023 Feburary ~ As paper published, ver 0.3)
Will be tested by our lab memebers to fix bugs and advance features~~
2. Beta release part 2 (As paper published ~ When pipeline gets stabled, ver 0.4)
Will be tested by peer taxonomists
2. ~~Beta release part 2 (As paper published ~ When pipeline gets stabled, ver 0.4)
Will be tested by peer taxonomists~~
3. Stable release (ver 1.0)

## Running the tests
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