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Community G graph: relative abundance does not establish competition or degrader identity #1347

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@realmarcin

Source-based self-adversarial finding on CommunityMech:000387, Community_G_GenX_Biodegradation_Consortium.yaml.

The sole node types relative taxonomic restructuring as COMPETITION (-/-), describes expansion/disappearance without measurement qualification, and adopts specialist-degrader interpretation as established function. PMID:42422733 Methods/Results measure 16S relative abundance alongside bulk GenX loss and fluoride release; genomic homology and docking do not identify causal member activities or reciprocal harm. Community G sterile-soil experiments must not inherit GENIA's indigenous-microbiome arm or ecological-safety interpretation.

Acceptance: retain the existing node and six canonical participants as a partial observed subset; qualify relative abundance and functional attribution; remove unsupported COMPETITION; preserve positive community chemical endpoints without inferring complete mineralization; add a focused mechanism gap, history, tests and rendered page. Do not recreate the dangling arrow already fixed in #947 or undo exact taxon IDs in #946.

Reviewed primary main body, Methods, Results, Discussion and displayed captions; no visual images or supplementary files inspected. PMID:42173377 is abstract-only context. No new structure or Edison spend.

Dedup: 684 all-state issue titles/bodies plus ignored/hidden-inclusive reports, history, research and tests searched; #947/#946/#948 address different prior defects. Comments not exhaustively searched. This is self-review, not independent approval.

Activity

  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1350 at ee38b8f0a6166f3d56dbf9ec07ac3afbabe2d1eb. Exact-head source-based self-adversarial review: #1350 (review). All 30 local gates and actual post-commit docs-current passed; 278 passed in 291.48s (0:04:51); 53 MATCH snippets and zero other classes; 3 passed in 2.55s; 42 unrelated raw blocks and six tracked caches byte-preserved. See committed batch23 decision/adversarial/validation records for source-access bounds and complete node/arrow accounting. Remains open until protected main merge; this is not independent approval.

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