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Composting graph: bound gene-potential and humification mediation claims #1348

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Description

@realmarcin

Source-based self-adversarial finding on CommunityMech:000277, Composting_SynCom_Lignocellulose_Degradation_Humus.yaml.

All three nodes are typed COLONIZATION_FACILITATION despite describing native-community abundance, CAZyme repertoire and compost outputs. The second arrow states that the repertoire enables measured degradation. The complete PMID:41297400 abstract reports metagenomics, metabolites and correlations, not a selective gene/mediator intervention or demonstrated establishment. The named Thermobifida/Actinomadura are enriched native genera, not the unspecified five-member bacterial-fungal inoculant roster.

Acceptance: retain three nodes/two arrows and positive inoculation-versus-control output; distinguish gene potential from enzyme activity; qualify both causal links as hypotheses supported by association; remove unsupported establishment typing; keep the entire native community scope without inventing inoculant membership. Add the full-body/roster/mediation gap, history, regressions and rendered page. Abstract-only access must be explicit; no full-body claim.

Dedup: 684 all-state titles/bodies and ignored/hidden-inclusive local reports/history/research/tests. Other mulberry-compost issues concern a different record. No duplicate exact graph finding in this scope; comments not exhaustive. Self-review, not independent approval.

Activity

  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1350 at ee38b8f0a6166f3d56dbf9ec07ac3afbabe2d1eb. Exact-head source-based self-adversarial review: #1350 (review). All 30 local gates and actual post-commit docs-current passed; 278 passed in 291.48s (0:04:51); 53 MATCH snippets and zero other classes; 3 passed in 2.55s; 42 unrelated raw blocks and six tracked caches byte-preserved. See committed batch23 decision/adversarial/validation records for source-access bounds and complete node/arrow accounting. Remains open until protected main merge; this is not independent approval.

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