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Succinate coculture graph: qualify redox mediation and transcript-inferred flux #1351

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@realmarcin

Source-based self-adversarial review of CommunityMech:000294, Corynebacterium_glutamicum_Shewanella_oneidensis_Succinic_Acid_Coculture.yaml.

The graph asserts Shewanella-to-Corynebacterium riboflavin-mediated redox coupling and three SYNTROPHY types. Its arrows turn additive screening and transcriptomic interpretation into demonstrated electron transfer and flux mediation. The complete PMID:42203120 abstract supports coculture/additive/genetic intervention outcomes, not partner-product removal making metabolism thermodynamically favorable, directed electron flux, or selectively demonstrated redox-to-transcript mediation. Full publisher Methods/Results were inaccessible (403).

Acceptance: retain all three nodes and two arrows; distinguish externally supplied 0.1 mM riboflavin from partner secretion; source-only Corynebacterium transcript response; remove unsupported SYNTROPHY; qualify retained arrows; retain parent yield 0.169 g/g (+45.65%), separate K1 yield 0.686 g/g and extended-fermentation improvement up to 23.4%, and lactate abolition after ldhA deletion. Do not assign parent results to K1. Add the focused access/mediation gap, history, tests and rendered page.

Dedup: 687 all-state issue titles/bodies and hidden/ignored-inclusive local reports/history/research/tests searched; no exact finding found in that scope. Comments not exhaustive. This is self-review, not independent approval. No new structure or Edison spend required.

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  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1355 at 2eb1818f3d94f9420099a991136254501b543891. Exact-head source-based self-adversarial review: #1355 (review). All 29 local gates and actual post-commit docs-current passed; 285 passed in 190.25s (0:03:10); 24 MATCH snippets and zero other classes; 3 passed in 1.56s; 36 unchanged raw blocks and three tracked caches byte-preserved. See committed batch24 records for source-access limits and complete node/arrow accounting. Remains open until protected main merge; not independent approval.

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