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Coscinodiscus graph: retain supplementation outcomes without inventing metabolite transfer #1357
The graph asserts measured DMSP exchange from genomic potential, specific auxotrophic rescue and diatom donation from broader nutrient responses, and universal MUTUALISM/COMMENSALISM/COMPETITION signs. Crucially, there ARE supplementation assays: pooled amino acids plus vitamins improved Rose1, Crocei1 and CS1 growth, with no CS4 response; carbon-only DMSP/glucose did not promote growth. Do not replace real experiments with a genome-only account.
Acceptance: retain five nodes/two qualified arrows; distinguish BLASTP potential from DMSP flux, pooled supplementation from individual B12/B3 rescue, and Crocei1 growth promotion from the neutral CS4/Rose1 and suppressed CS1 bacterial outcomes. Preserve partner-specific algal responses, phase-specific generalized Lotka-Volterra fit (days 1-17 and 17-41), and tested community inhibition without universal absence of higher-order interactions. Remove cob(I)alamin as an unsupported exact vitamin form. Add gap/history/tests/page.
Three short Results excerpts will be primary-source verified but absent from the abstract-only cache. Report that retrieval limit explicitly under existing #596, without copying a full copyrighted body or promoting curated excerpts to independent cache text.
Dedup: 691 all-state issue titles/bodies plus hidden/ignored-inclusive local reports/history/research/tests searched. No exact finding in that scope; comments not exhaustively searched. Source-based self-adversarial review, not independent approval.
Addressed in #1361 at 5f7e0faecd6486addf38d462234f7cb6067d29a4. Exact-head self-adversarial review: #1361 (review). 293 passed in 187.32s (0:03:07); 3 passed in 1.93s; 46 MATCH and 3 documented abstract-cache MISMATCH snippets; 27 unchanged raw blocks and eight tracked caches byte-preserved. Actual post-commit docs-current passed. One reference command retains its exit-1 diagnosis for three primary-verified Results quotes absent from the abstract-only cache; not a passed reference gate. See committed batch25 reports. Remains open until protected main merge; not independent approval.
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realmarcin commentedon Oct 6, 2026
Addressed in #1361 at
5f7e0faecd6486addf38d462234f7cb6067d29a4. Exact-head self-adversarial review: #1361 (review). 293 passed in 187.32s (0:03:07); 3 passed in 1.93s; 46 MATCH and 3 documented abstract-cache MISMATCH snippets; 27 unchanged raw blocks and eight tracked caches byte-preserved. Actual post-commit docs-current passed. One reference command retains its exit-1 diagnosis for three primary-verified Results quotes absent from the abstract-only cache; not a passed reference gate. See committed batch25 reports. Remains open until protected main merge; not independent approval.