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Fahmy T4 graph: remove unsupported mutualism and distinguish predicted enzymes from removal #1368

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@realmarcin

Source review of kb/communities/Cyantraniliprole_Fahmy_Consortium_T4.yaml (CommunityMech:000369), including the complete primary main body, tables and captions: Fahmy et al., PMID:42354927.

Both existing nodes carry MUTUALISM, but the source provides community outcomes and post-assay enzyme/pathway predictions, not reciprocal member-specific fitness benefits. Table 8's enzyme assignments are not measurements of expression, flux or enzyme necessity. The HPLC result is parent-compound removal in T4-augmented water containing a native microbiota, not demonstrated mineralization, detoxification or six-member indispensability.

Remove unsupported relationship signs while retaining the two nodes, six canonical strains, positive HPLC result and the existing zero-arrow topology. Keep the 98.27% calculation relative to the 57.79 mg/L zero-day residue, not the nominal 60 mg/L spike. Bound computational versus experimental evidence and maintain an exact-node knowledge gap. Preserve the earlier fixes tracked by #869 and #870; this is not a duplicate of those quotation/denominator issues. No new graph structure is needed for this repair.

Deduplication: 700 all-state issue titles/bodies, relevant prior issues, and ignored/hidden-inclusive local review/history searches. Not every issue comment was searched.

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  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Addressed in graph-only #1374 at 8e46f69f9498a03915cdc0ab33c2f8f2c8e19e91 with exact-head self-adversarial COMMENT #1374 (review). 336 passed in 306.36s (0:05:06); actual post-commit docs-current passed. Complete decisions, validation and source limits are committed. Non-graph follow-ups #1371, #1372 and #1373 remain open. This graph issue closes only after protected main merge.

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