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BAV1/Fusaro metadata: separate DMB rescue medium from cobalamin controls and strain-specific substrates #1386

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@realmarcin

Non-graph follow-up for Dehalococcoides_Methanosarcina_DMB_Cobalamin_Coculture.yaml.

The growth-medium composition lists cobalamin without distinguishing the exogenous-cobalamin positive control from the DMB-amended partner-support arm. It lists chloroethene while the primary BAV1/Fusaro assay starts with cis-DCE; GT and FL2 use TCE. Do not copy the pooled three-strain outcomes into BAV1-specific metadata.

Yan 2013 indexed Methods describe washed cobalamin-free inocula, acetate and H2/CO2 in the coculture, with cobalamin added separately to positive controls. Current metadata must distinguish these arms before any recipe expansion. Graph-only curation preserves these fields; complete primary body and figure images have not been retrieved in this review.

Deduplication: 712 all-state issue titles/bodies, broader Dehalococcoides/corrinoid synonym searches, and ignored/hidden-inclusive scoped local reports, research, history, tests, scripts and workflows. Relevant broader issues #765, #650, #543, #529, #384 and #383 describe other records or general safeguards, not these defects. Not all issue comments were searched.

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  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Graph corrections published in #1387; this non-graph follow-up remains open. Metadata blocks were preserved, not certified by graph curation. Source-access and experimental-arm limits remain explicit.

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