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EcoFAB SynCom17 metadata: disentangle ring-trial, isolate and nitrogen-study protocols #1427

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@realmarcin

EcoFAB_Ring_Trial_SynCom17.yaml, PMID:40920748 and doi:10.1126/sciadv.adg7888. Non-graph fields mix separate studies and assay stages: the ring trial inoculated 10-day-old seedlings, with 14 h / 10 h photoperiod at most labs (16 h light at C); the RFP isolate assay used 3-day-old plants and bacterial preculture at 27 C / 200 rpm. Nitrogen-form/starvation experiments used sterile plants, not this SynCom. Review attribution of amino-acid depletion to OAS925-specific uptake, direct OAS925 plant-growth causation, and unsupported generic member roles. Preserve the corrected Allobosea ID/label (#365/#442). These metadata are preserved, not certified, by graph-only edits.

Deduplication: 748 all-state issue titles/bodies and ignored/hidden-inclusive local review, research, history, tests, scripts and workflow files. Relevant #1264, #826, #827, #830, #365 and #442 read; no exact duplicate within that scope. Not every issue comment searched. Primary cached main-body texts reviewed, not visual figures, raw data or separate supplements.

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  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Graph-only corrections published in #1430. This separate follow-up remains OPEN; non-graph raw blocks preserved, not certified. Source quantitative conflicts were disclosed rather than silently reconciled.

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