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Eucalyptus nursery graph: separate prior traits, root composition and genotype-specific quality #1445

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@realmarcin

Eucalyptus_Nursery_FiveStrain_Inoculant_SynCom.yaml, PMID:42050290.

Full cached primary main body read. Prior phosphate-solubilization, nifH and indolic-compound screens do not measure nursery nitrogen-fixation flux or specific IAA exchange. Remove categorical colonization facilitation and mutualism: root community composition and genotype-dependent host quality do not show inoculant persistence or reciprocal bacterial fitness. No robust genus/phylum differential abundance survived ANCOM-BC2 sensitivity analysis. The operational dead category includes severe stem curvature, so 21.8% to 6.7% is not exclusively literal death. Preserve the three nodes and the two workflow-arrow removals in the 2026-10-02 history; qualify outcomes and add canonical inoculant/host participants as experimental context, not an exhaustive root community.

Deduplication: 766 all-state issue titles/bodies plus ignored/hidden-inclusive local searches; relevant #596, #1206, #816, #1027 and #1140 and prior record histories read. No exact duplicate in that scope; not every comment searched. Full cached main bodies read for all three records; actual FOS Figure 7 inspected. Other figures, separate supplements and raw data were not reviewed.

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  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Existing-graph defect addressed in #1451 at 14e7003. Exact-head self-adversarial COMMENT: #1451 (review). 415 passed in 182.97s (0:03:02); actual post-commit docs-current passed. Nine nodes and three arrows retained. Close only after protected main merge. FOS expansion #1450 and non-graph followups remain open.

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