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FOS gut-liver causal expansion: curate extract pretreatment and host-cell response with unresolved mediator #1450

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@realmarcin

FOS_Lactobacillus_MinimalCore_GutLiver_SynCom.yaml, PMID:42781020.

The three current microbial nodes omit the source-backed extract/host-cell endpoint. Primary Methods and Results describe extract pretreatment followed by palmitate challenge, reduced Oil Red O lipid staining and Cd36 mRNA for probiotic/whole-community extracts, but no identified active metabolite or selective Cd36 mediation. Assess an evidence-bearing endpoint and bounded link, without inventing a specific acid donor or causal gene mechanism.

Required one-community Edison causal dry run completed: 13,999 query characters, query SHA256 9e38a8a777c684c84336af9d518fece7d182d2756094704c4e361a0b0e1f13e4. No API call or provider spend. Specific authorization for this new job was requested; no actual job has run. Review any report against primary evidence before writing new structure. Keep record status needs_research until this work is addressed. The existing-node repair must not imply graph completeness.

Deduplication: 766 all-state issue titles/bodies plus ignored/hidden-inclusive local searches; relevant #596, #1206, #816, #1027 and #1140 and prior record histories read. No exact duplicate in that scope; not every comment searched. Full cached main bodies read for all three records; actual FOS Figure 7 inspected. Other figures, separate supplements and raw data were not reviewed.

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  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Existing-node repairs published in #1451, but this expansion remains OPEN and FOS remains needs_research. One-community Edison dry run completed; no API call or charge. Specific authorization requested. Missing host-response endpoint is not silently treated as complete.

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