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Complete the source-supported acetate branch in Geobacter-Methanosaeta after Edison review #1482

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@realmarcin

CommunityMech:000032; Geobacter_Methanosaeta_DIET; doi:10.1039/C3EE42189A.

The now-accessible primary paper resolves the previously recorded source-access gap: Figure 4c separates acetate-derived methane from DIET-driven CO2 reduction, and Figure 5 provides radiotracer support. The existing three-node graph omits the acetate branch. Correcting the existing CO2 node does not complete this missing causal structure.

Acceptance: run and inspect one-community Edison causal mode after explicit credit authorization; independently verify its node/edge tables, DOT, gaps and primary snippets, canonical taxa and compounds. Add only source-supported acetate-transfer/conversion structure, with its own evidence, guarded history, tests, generated page and all-node/all-edge decisions. Update status from needs_research only after exact-byte verification. Dry run completed with 13,233 prompt characters and no API calls/credits. Specific authorization requested asynchronously; no paid job or report yet. Preserve the primary PDF only in temporary storage, not as an unlicensed committed full text.

Source-based self-adversarial review, not independent approval. Whole records were read, with a pre-source both-root baseline from batch45 and a fresh unchanged-target/cache baseline for batch46. Complete primary main texts/Methods/captions were read for 2014 papers and the 2023 T6SS study. Selected 2014 figure images were inspected; no separate supplements, raw data or analysis code audited. All794 open/closed issue titles/bodies and ignored/hidden local review/history/research/tests/scripts/workflows searched; matched bodies #1091/#751/#306 read. Existing validator/cache issues are not duplicated. Not every issue comment or PR review inspected.

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  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Existing-node corrections published, but this missing-branch issue remains OPEN and the record remains needs_research. No paid job or completed expansion is claimed. #1484 at b59f9d6; exact-head self-adversarial review: #1484 (review). 461 passed in 211.31s (0:03:31); post-commit docs-current passed. Decisions, actual outputs and limitations committed. Not independent approval.

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