Skip to content

Bound Lac Pavin graph to depth-associated genomic potential #1550

Closed

Description

@realmarcin

kb/communities/Lac_Pavin_Stratified_Lake_Community.yaml, PMID:36694212: genome-resolved metagenomics supports depth-associated metabolic potential, not measured flux or carbon fixation causing the methane-cycle and CPR/DPANN distributions. Oxygen co-varies with other geochemistry; CPR gene content has weak depth differentiation. RuBisCO II/III and III variants suggest nucleotide-associated CO2 incorporation, not complete Calvin-cycle autotrophy.

Repair all three existing nodes, drop both common-gradient arrows, qualify computational evidence and incomplete canonical participant coverage. Preserve positive genetic-potential observations. Add every-node/arrow decisions, history, tests and regenerated page. Close only after protected-main merge.

Source-based self-adversarial review, not independent approval. No new nodes/arrows or paid Edison submission.

Activity

  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1555 at e17817e; exact-head self-review:#1555 (review). 570 passed in 294.68s (0:04:54); post-commit docs-current passed. Every-node/arrow decisions and actual output digests committed with explicit primary-source limits. Not independent approval. Close only after protected-main merge. Related1553/1554 remain unresolved.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions