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Scope Lupinus SC7 graph to assay-specific observations and canonical inoculants #1562

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@realmarcin

kb/communities/Lupinus_SC7_Rhizosphere_SynCom.yaml, PMID:42602126. Preserve all three observations and zero arrows. Main Table1 identifies twelve SC7 strains, including two distinct Streptomyces strains. Make their participation explicit without treating them as a full host/background-soil roster. Distinguish FlowPot root RNA-seq from CAS-soil microbiome results. Richness and composition covary; expression/enrichment is not nitrogen-fixation flux or a demonstrated growth mediator. CAS relative profiles are not absolute exclusion or exact inoculated-strain persistence. The paper says no significant compartment treatment effects while reporting PERMANOVA p=.001; preserve this unresolved reporting inconsistency rather than certifying a blanket significance claim. Close only after protected-main merge.

Source-based self-adversarial review, not independent approval. Existing-node/arrow repair only; no new causal structure or paid Edison submission.

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  1. realmarcin commented on Oct 6, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1565 at 5b6301d; exact-head self-review:#1565 (review). 587 passed in 201.44s (0:03:21); post-commit docs-current passed. Every-node/arrow decisions and actual output digests committed with explicit primary-source limits. Not independent approval. Close only after protected-main merge. Related1564 remains unresolved.

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