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Separate magnetite methane improvement from unvalidated DIET and model flux #1573
PMID:42231497; kb/communities/Magnetite_Sulfate_Stress_Anaerobic_Microbiome.yaml. Preserve all three nodes and zero arrows, including #914 backward-edge deletion. A 19% methane improvement is relative to SULF_0.6, not full sulfate-free recovery or rescue at 1.2 g/L. Sulfide removal is measured in separate abiotic experiments; sulfur speciation and biotic causal mediation are not isolated. No abiotic H2 accumulation was detected. Metagenomics sampled one biological replicate per sequenced condition; relative MAG abundance is not replicated absolute growth. Four representative, gap-filled and role-curated GEMs are constrained by reactor outputs, so matching them is not independent validation. Retain computational cross-feeding with explicit model limits and putative SRB status, not measured partner flux or demonstrated DIET. Preserve #913/#915 and existing DIET gap. Close only after protected-main merge.
Source-based self-adversarial review, not independent approval. Deduplication:865 all-state issue titles/bodies and24 scoped ignored/hidden local matches; full relevant #1127/#1128/#913/#914/#915 bodies and prior graph histories read. Not every PR/comment/local artifact was read.
Addressed in #1576 at 63b4be2; exact-head self-review:#1576 (review). 603 passed in 214.64s (0:03:34); post-commit docs-current passed. Every-node decisions and actual output digests committed. Not independent approval; close only after protected-main merge. #1574 metadata and #1575 new causal structure remain unfinished.
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realmarcin commentedon Oct 6, 2026
Addressed in #1576 at 63b4be2; exact-head self-review:#1576 (review). 603 passed in 214.64s (0:03:34); post-commit docs-current passed. Every-node decisions and actual output digests committed. Not independent approval; close only after protected-main merge. #1574 metadata and #1575 new causal structure remain unfinished.