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Distinguish inferred gas rates from direct exchange in Synechococcus coculture #1609

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@realmarcin

CommunityMech:000170. Preserve photosynthetic oxygen support and positive gas-to-biomass conversion. PMID:33064298 estimates individual O2/CO2 rates using measured overall gas changes, dissolved inorganic carbon and growth stoichiometry (equations 3-9); those are not independently measured partner fluxes. Preserve the 20ZR derivative distinction and qualify the respiratory CO2 fraction rather than claiming measured reciprocal exchange. Original PMID:28092828 supports reactor physiology at abstract scope; the PNNL full-text URL returned 403. Full public follow-up manuscript, captions, tables and included supplement text were inspected; equation pages 10-11 were visually checked. Remove mutualism labels where directed benefit/system biomass alone does not establish reciprocal fitness.

Batch72 source-based self-adversarial review, not independent approval. Dedup: all 896 all-state issue titles/bodies plus ignored/hidden-inclusive local search; matching issues #952, #953, #1195 and #1196 read. Graph tasks close only after protected-main merge. No provider credits spent.

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  1. realmarcin commented on Oct 7, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1613 at ecbf525; exact-head self-review:#1613 (review). 648 passed in 211.20s (0:03:31); post-commit docs-current passed. Every-node/every-arrow decisions and actual output digests committed. Not independent approval; close only after protected-main merge. Non-graph metadata #1612 remains unfinished.

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