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Separate cyanobacterial core enrichment from causal recruitment mechanisms #1620

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@realmarcin

Model_Cyanobacterial_Consortia_Core_Microbiome: full primary PMID40626910 supports 108 retained consortia and a 25-species operational core, not every species in every culture. Host and inoculum significantly affect composition; no cyanobacteria-free control separates host selection from medium effects. Preserve enriched genomic/plasmid potential while qualifying proposed symbiosis/cross-feeding. Remove two analysis-workflow arrows, not the observed nodes. Repair misleading host-independent title and unconditional fitness classification.

Dedup:906 all-state issue titles/bodies; ignored/hidden-inclusive local search with explicit docs/site/cache/git exclusions,31 matching files. No exhaustive PR-comment audit. Self-adversarial review, not independent approval. Close only after protected-main merge.

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  1. realmarcin commented on Oct 7, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1625 at 3e84468; exact-head self-review:#1625 (review). 662 passed in 202.52s (0:03:22); post-commit docs-current passed. Every-node/every-arrow decisions and actual output digests committed. Not independent approval; close only after protected-main merge. Non-graph metadata #1624 remains unfinished; all four current reference gates passed.

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