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Bound PD10 FBA and pairwise agar evidence while preserving medium-dependent assembly #1647
Description
CommunityMech:000047; PMID:33995895. Full primary main text and Tables1/2 read. Keep controlled MOPS/R2A assembly effects and explicitly hypothesized exchange-support arrow; distinguish endpoint-constrained FBA, protein capacity and actual exchange flux. Correct exclusive AP49 target implication and remove purine-alkaloid/aromatase-inhibitor groundings for generic predicted metabolites. Bound agar phenotypes versus liquid selection and Bacillus protein versus viable-cell abundance. Preserve prior workflow-arrow removal. Existing1532/1533 cover a different KBase R2A record, not this PD10 graph. Close only after protected-main merge.
Dedup:926 all-state issue titles/bodies, 99 ignored/hidden-inclusive local matches (excluded git/docs/site/reference cache). Read matching12/416/592/595/1083/1532/1533 plus529/543. No exhaustive PR-comment audit. Source-based self-adversarial review, not independent approval.
Activity
realmarcin commentedon Oct 7, 2026
Addressed in #1651 at d9da91d; exact-head self-review:#1651 (review). 696 passed in 202.21s (0:03:22); post-commit docs-current passed. Every-node/every-arrow decisions and actual output digests committed. Not independent approval; close only after protected-main merge. Metadata #1650 remains unfinished; all four current reference gates passed.