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Bound PES pyrene graph to removal assays and proposed enzyme/emulsifier mediation #1685
CommunityMech:000340, PMID42666409. Preserve measured near-complete pyrene removal and extracellular emulsifying activity. Qualify two arrows and hphtC-5 enzyme assignment; distinguish soybean-oil emulsification from demonstrated pyrene bioavailability, note different cultivation substrates, and remove reciprocal-fitness typing. Published correction DOI10.3389/fmicb.2026.1971230 confirms dicarboxyphenanthrene to carboxyphenanthrene direction. No new topology. Close only after protected-main merge.
Searched 962 all-state issue titles/bodies and read six matches (#1397, #1394, #1272, #1232, #1217, #1216); local hidden/ignored-inclusive search found 62 files, excluding .git/docs/site/references_cache. Additional exact coaggregation-reference search found no matching issue. Comments not exhaustively searched. Four whole records; primary PES main text/correction, pepper-growth main text and pepper-biocontrol PDF reviewed; syntrophy species paper and coaggregation evidence abstract/caption limited. Self-adversarial review, not independent approval.
Addressed in #1693 at f29d929; exact-head self-review:#1693 (review). 746 passed in 437.51s (0:07:17); post-commit docs-current passed. Every-node/every-arrow decisions and actual output digests committed. Not independent approval; close only after protected-main merge. Metadata #1691 remains unfinished; all four current reference gates passed.
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realmarcin commentedon Oct 7, 2026
Addressed in #1693 at f29d929; exact-head self-review:#1693 (review). 746 passed in 437.51s (0:07:17); post-commit docs-current passed. Every-node/every-arrow decisions and actual output digests committed. Not independent approval; close only after protected-main merge. Metadata #1691 remains unfinished; all four current reference gates passed.