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Separate observed lithosyntrophy from proposed intracellular energy mechanism #1697

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@realmarcin

CommunityMech:000290; PMID41811448. Preserve three nodes and both H2-to-methanogenesis arrows. Qualify HndABCD/Rnf mechanism as metaproteomic/thermodynamic model, not direct enzyme causality. Correct methanogenic sink actor direction. Net phosphite oxidation remains exergonic; excess H2 inhibits the intracellular energy-conserving process. Preserve BES inhibition, H2 inhibition and G11 rescue as primary-positive evidence without universal Methanoculleus exclusivity. Close only after protected-main merge.

Dedup: 969 all-state issue titles/bodies; original three matched issues #1134/#1136/#543 read, plus exact-ID/DOI/PMID search with no additional issue matches. Hidden/ignored-inclusive local searches included 22 original and six additional matching files, excluding .git/docs/site/references_cache. Issue comments not exhaustively searched. Whole records and primary main text read; phenol full text is an existing cached primary copy because fresh full-text retrieval failed. Self-adversarial review, not independent approval.

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  1. realmarcin commented on Oct 7, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1702 at 32423c9; exact-head self-review: #1702 (review). 756 passed in 350.42s (0:05:50); postcommit docs-current passed. Decisions and actual output digests committed. Not independent approval; close only after protected-main merge. Research1698-1700and metadata1701 remain unfinished.

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