Separate pine isolate screening from SynCom growth and defense endpoints #1705

CommunityMech:000280; PMID42322490. Preserve compatibility, isolate inhibition, significant pot-growth and PPO/POD increases. Pairwise compatibility is not long-term stability or niche partitioning. Public Supplement S1/Table S2 identify Phomopsis sp. for plate inhibition; S2 tests cell-free supernatants against urediniospore germination. NA11/NA3/RE7 belong to the final SynCom, but not every screened isolate does; RC1/OB3 are not among the nine germination treatments. Remove both isolate-selection/antagonism-to-host-response mediation arrows. Remove unsupported reciprocal mutualism and IAA/nitrogen-fixation mediation; classify pot endpoints IN_VIVO. Defense enzymes are not demonstrated disease protection or priming. Close only after protected-main merge.

Dedup: 978 all-state issue titles/bodies; matched closed #1116/#1117/#1118 read. Exact IDs, PMIDs, DOIs, record names and CCMA strains included. Local hidden/ignored-inclusive search found 43 files, excluding .git/docs/site/references_cache. Four primary cache files separately read. Comments/PRs not exhaustively searched. Fresh baseline preceded sources. Source-based self-adversarial review, not independent approval.