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Bound Polaromonas vanadium graph to enrichment evidence and inferred genes #1712
CommunityMech:000055; PMID:33125214. Preserve enrichment V(V) reduction, proposed Polaromonas/MAG involvement, and reduction-to-V(IV)-precipitation direction supported by public Supplement Figure S2 with autoclaved/no-vanadate controls. Remove unsupported Desulfovibrio-to-Desulfitobacterium sulfide and Geobacter-to-Polaromonas sequential-iron routes, exact kinetics/minerals/percentages, reciprocal interaction types and source-only PAIRWISE scope. Enrichment-level reduction is positive; Polaromonas attribution and cymA/omcA/narG function remain inferred, not gene perturbations. Canonical non-graph membership and locality problems are a separate issue. Close only after protected-main merge.
Dedup: current all-state issue titles/bodies searched by exact IDs, PMIDs, DOIs and stems. Related #1680 read; this is the distinct Polaromonas record. Local ignored/hidden files included, excluding .git/docs/site/references_cache; relevant caches separately inspected. Comments and PRs not exhaustive. Source-based self-adversarial review, not independent approval.
Addressed in #1717 at 00d6309; exact-head self-review: #1717 (review). 776 passed in 260.37s (0:04:20); postcommit docs-current passed. Decisions and actual output digests committed. Not independent approval; close only after protected-main merge. Research1715and metadata1716remain unfinished.
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realmarcin commentedon Oct 7, 2026
Addressed in #1717 at 00d6309; exact-head self-review: #1717 (review). 776 passed in 260.37s (0:04:20); postcommit docs-current passed. Decisions and actual output digests committed. Not independent approval; close only after protected-main merge. Research1715and metadata1716remain unfinished.