Skip to content

Bound Polaromonas vanadium graph to enrichment evidence and inferred genes #1712

Closed

Description

@realmarcin

CommunityMech:000055; PMID:33125214. Preserve enrichment V(V) reduction, proposed Polaromonas/MAG involvement, and reduction-to-V(IV)-precipitation direction supported by public Supplement Figure S2 with autoclaved/no-vanadate controls. Remove unsupported Desulfovibrio-to-Desulfitobacterium sulfide and Geobacter-to-Polaromonas sequential-iron routes, exact kinetics/minerals/percentages, reciprocal interaction types and source-only PAIRWISE scope. Enrichment-level reduction is positive; Polaromonas attribution and cymA/omcA/narG function remain inferred, not gene perturbations. Canonical non-graph membership and locality problems are a separate issue. Close only after protected-main merge.

Dedup: current all-state issue titles/bodies searched by exact IDs, PMIDs, DOIs and stems. Related #1680 read; this is the distinct Polaromonas record. Local ignored/hidden files included, excluding .git/docs/site/references_cache; relevant caches separately inspected. Comments and PRs not exhaustive. Source-based self-adversarial review, not independent approval.

Activity

  1. realmarcin commented on Oct 7, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1717 at 00d6309; exact-head self-review: #1717 (review). 776 passed in 260.37s (0:04:20); postcommit docs-current passed. Decisions and actual output digests committed. Not independent approval; close only after protected-main merge. Research1715and metadata1716remain unfinished.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions