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Separate RH1 removal endpoints from mutualism and carbon-fate causality #1748

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@realmarcin

Record: kb/communities/RH1_Glyphosate_Streptomyces_Consortium.yaml (CommunityMech:000361).

P2: Both outcome nodes carry MUTUALISM, but compatibility and consortium-versus-previous-single-strain performance do not establish member-resolved reciprocal benefit. The direct biodegradation-to-TOC arrow also treats parallel readouts as an established causal carbon-fate link.

Primary main text: https://pmc.ncbi.nlm.nih.gov/articles/PMC13457305/ (PMID:42582159), methods 2.4, results 3.4, discussion and conclusion. TOC samples were centrifuged and filtered; the 91.03% endpoint does not quantify a closed carbon balance or distinguish mineralization from biomass/phase partitioning. Preserve the measured glyphosate, TOC, compatibility and ATR-FTIR outcomes; remove both categorical labels and the unsupported direct arrow; qualify the measured fraction and add a focused gap. Retain the existing unresolved-gene discussion and non-graph fields. Do not reopen or undo #842/#843/#844.

Source-based self-adversarial finding, not independent review. Acceptance: focused schema/strict/term/reference checks, explicit snippet-access limitations, regression tests, history, both-root audit and regenerated pages. Close only after protected-main merge.

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  1. realmarcin commented on Oct 7, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1749 at ba6bdfb; exact-head self-review: #1749 (review). 848 passed in 236.44s (0:03:56); postcommit docs-current passed. Decisions and41actual output records/digests committed. Four records reviewed, three changed, five nodes retained, one unsupported arrow removed. Not independent approval; close only after protected-main merge.

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