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Separate acid-soil SynCom assembly and phosphorus hypotheses from measured outcomes #1757

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Description

@realmarcin

Finding

Assembly is an experimental design operation, not an ecological interaction; remove that node and its arrow. The primary abstract supports rhizodeposited-carbon use, extracellular protonation/Al mitigation, and a 26.36% field yield increase. It describes legacy phosphorus usage as a promising route, not a quantified causal mediation result. Preserve these positive observations but label the phosphorus node and existing mediation arrows HYPOTHESIZED/PARTIAL. Complete main text was not accessible; record this limit and do not substitute the commentary PMID:38324131 for primary mechanistic evidence.

Scope

Record: Rice_Acid_Soil_Bioinoculant_SynCom
ID: CommunityMech:000109
Source: PMID:37783790

Batch94 source-based self-adversarial review, not independent approval. All-state issue titles/bodies freshly searched (1019 issues); matching23/319 concern prior creation/scope policy,1093 cache-stub policy. Local search includes ignored/hidden files, excluding.git/docs/site/references_cache; relevant caches separately read. Comments/PRs not exhaustively searched.

Closure

Close only after the repair reaches protected main.

Activity

  1. realmarcin commented on Oct 7, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1760 at 1b17429; exact-head self-review: #1760 (review). 864 passed in 277.19s (0:04:37); postcommit docs-current passed.42 actual validation outputs/digests plus decisions and source provenance are committed. Four records changed;14nodes13existingdirections retained. Non-graph1759 and existing loader1703/Linux DOI-cache1091 remain unresolved. Not independent approval; close only after protected-main merge.

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