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Correct Selenomonas graph evidence modality and outcome scope #1773

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@realmarcin

SMutans_SSputigena_ECC_Pathobiont.yaml (CommunityMech:000084; PMID37217495): entrapment and structured acidogenesis are in-vitro observations, not in vivo. Preserve supported S. mutans-to-S. sputigena colonization facilitation and the existing structural direction. Reclassify mixed-biofilm acidogenesis and rodent lesion outcome as COMMUNITY_LEVEL with exactly the two existing members; disease severity does not establish recipient colonization. Primary results include matrix-disruption evidence and ex-vivo enamel damage, so do not demote all findings to association. Bound the in-vivo mediation bridge as PARTIAL, and do not infer human causal direction from cross-sectional discovery. No new topology or experimental instructions.

Dedup: fresh all-state issue titles/bodies and ignored/hidden-inclusive local search with .git/docs/site/references_cache excluded; relevant caches separately inspected. Matching issues read, not duplicates of these findings. Comments/PRs not exhaustive. Source-based self-adversarial review, not independent approval. Graph-repair issues close only after protected-main merge.

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  1. realmarcin commented on Oct 7, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1777 at f74410c; exact-head self-review: #1777 (review). 888 passed in 507.98s (0:08:27); postcommit docs-current passed.44validation outputs/digests plus decisions and provenance are committed. Four records changed;all11nodes7directions retained. Two direct-result citations added after adversarial diff review, with append-only correction histories. Non-graph1776 and existing loader1703/Linux DOI-cache1091 remain unresolved. Not independent approval; close only after protected-main merge.

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