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Separate predicted soil corrinoid supply, measured responses and reservoir hypotheses #1809
Description
Activity
Addressed in #1815 at f3f972b; self-review: #1815 (review). 935 passed in 299.74s (0:04:59); postcommit docs-current passed.41gate outputs/digests, decisions, provenance and four append-only histories committed.10of14nodes retained;2original directions explicitly hypothesized; all20reviewed quotations match fresh primary text and unchanged caches. Plain just-lint passed; explicit-runtime no-incremental mypy additionally checked. Identity1813 and non-graph1814 stay open. Not independent approval; close only after protected-main merge.
Finding
CommunityMech:000221 / Soil_Corrinoid_B12_Reservoir_Community, PMID:38832716 (PMC11287211). MAG annotations predict producer capacity, not measured transfer. The source explicitly leaves release, replenishment and bioavailability unresolved. Retain all three observations and both existing directions only as HYPOTHESIZED model links: producer release to reservoir and reservoir modulation of the response to amendment. Replace categorical CROSS_FEEDING/NICHE_PARTITIONING and the unqualified stability title. Distinguish the native, predominantly cobalamin reservoir from experimentally added corrinoids. No new directions or cultivation methods.
Lifecycle
Address in the dependent batch103 PR; close only after protected-main merge. Self-adversarial review is not independent approval. No paid provider submission or new topology is part of this repair.