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Withhold sfSynCom strain-resolved graph attribution pending membership verification #1818

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Description

@realmarcin

Finding

CommunityMech:000064 / Soybean_N_Fixation_sfSynCom, PMID:40052412. The accessible abstract reports two Pantoea helpers among helper strains, but does not identify their names or the complete final sfSynCom membership. The record assumes exactly three microbial members and uses ordinal helper labels as strain names. Its two duplicated MUTUALISM nodes and two arrows assign a source-wide result to these unverified slots, and the final pairwise plant node converts a consortium-level comparison into reciprocal pairwise benefit. Withhold all three strain/formulation-attributed nodes pending the separate identity audit; retain the positive published observations and access limitations in a source-grounded discussion. Do not reject the paper, silently identify another community, or add new biological enhancement procedures.

Lifecycle

Address in the dependent batch104 PR; close only after protected-main merge. Self-adversarial review is not independent approval. No paid provider submission or new topology is part of this repair.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1822 at 5d8eb3b; self-review: #1822 (review). 943 passed in 309.18s (0:05:09); postcommit docs-current passed.41gate outputs/digests, decisions, provenance and four append-only histories committed.6of11nodes retained;5nodes and6directions removed; all14reviewed quotations match fresh primary text and unchanged caches. Plain just-lint passed; explicit-runtime no-incremental mypy additionally checked. Identity1820 and non-graph1821 stay open. Not independent approval; close only after protected-main merge.

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