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Qualify soymilk succession and omics-inferred cross-feeding #1819
Description
Finding
CommunityMech:000448 / Soymilk_Mixed_Starter_Metabolic_Division_SynCom, PMID:42637460. Retain observed starter succession and the single-strain-dropout transcriptional response. Qualify facilitation and metabolite supply as HYPOTHESIZED/PARTIAL, remove categorical CROSS_FEEDING, and add abstract-bounded computational provenance without guessed tools or versions. Scope the succession to the two canonical taxa it names. No directed arrow is established from succession or inferred nutrient supply to another graph node.
Lifecycle
Address in the dependent batch104 PR; close only after protected-main merge. Self-adversarial review is not independent approval. No paid provider submission or new topology is part of this repair.
Activity
realmarcin commentedon Oct 8, 2026
Addressed in #1822 at 5d8eb3b; self-review: #1822 (review). 943 passed in 309.18s (0:05:09); postcommit docs-current passed.41gate outputs/digests, decisions, provenance and four append-only histories committed.6of11nodes retained;5nodes and6directions removed; all14reviewed quotations match fresh primary text and unchanged caches. Plain just-lint passed; explicit-runtime no-incremental mypy additionally checked. Identity1820 and non-graph1821 stay open. Not independent approval; close only after protected-main merge.