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Scope staged manure SynCom transcript evidence to Ensifer S2-8-1 #1826

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Description

@realmarcin

Finding

CommunityMech:000418 / Staged_Cattle_Manure_Ensifer_Bacillus_SynCom, PMID:42341825. The metatranscriptomic observation is specifically assigned to S2-8-1; add its canonical identity-only participating_taxa rather than crediting both members. Retain measured transcript upregulation, not protein activity, nitrogen flux or proven mediation of plant growth. Preserve earlier removal of CROSS_FEEDER roles and the IN_VIVO pot classification. Keep broth-density comparisons distinct from the 41.4% maize dry-matter result versus water control. Do not mint transcript-to-broth or transcript-to-host causal arrows.

Lifecycle

Address in the dependent batch105 PR; close only after protected-main merge. Self-adversarial review is not independent approval. No paid provider submission or new topology is part of this repair.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1828 at 20d6692; self-review: #1828 (review). 951 passed in 379.05s (0:06:19); postcommit docs-current passed.42gate outputs/digests, decisions, provenance and four append-only histories committed.All9nodes/1qualified direction retained;1restatement arrow removed; all22reviewed quotations match fresh primary text and unchanged caches. Plain just-lint passed; explicit-runtime no-incremental mypy additionally checked. Non-graph1827 stays open. Not independent approval; close only after protected-main merge.

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