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Separate Carboxydocella genome-analysis workflow from ecological response and functional potential #1832
Description
Finding
CommunityMech:000251, PMID:32633030. Remove the genome-resolution workflow node, preserving the prior 2026-10-02 removal of analysis-provenance arrows. Retain the community response and relative Carboxydocella decline without implying absolute cell loss or measured fitness. CODH gene comparison supports inferred CO-oxidation potential, not demonstrated physiological switching or measured carbon/electron flux. Qualify the two remaining existing directions and their endpoint interpretations, with abstract-bounded computational provenance and no invented methods. A publisher full-text request failed with Internal Error, not a verified HTTP status or proof of global full-text absence.
Lifecycle
Address in the dependent batch106 PR; close only after protected-main merge. Self-adversarial review is not independent approval. No paid provider submission or new topology is part of this repair.
Activity
realmarcin commentedon Oct 8, 2026
Addressed in #1835 at 2d931ac; self-review: #1835 (review). 959 passed in 793.39s (0:13:13); postcommit docs-current passed.41gate outputs/digests, decisions, provenance and four append-only histories committed.18nodes/5qualified directions retained;1workflow node and5unsupported/restatement arrows removed; all36reviewed quotations match fresh primary text and unchanged caches. Plain just-lint passed; explicit-runtime no-incremental mypy additionally checked. Non-graph1833 stays open. Not independent approval; close only after protected-main merge.