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Bound ARC outcome graph to protective assays and distinguish nodulation from aggregate yield #1840

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Description

@realmarcin

Finding

CommunityMech:000314, PMID:42099455. Preserve measured fungal suppression, rhizobial facilitation, nodulation, nitrogenase and field yield outcomes. The average85.6% aflatoxin reduction was measured after12months natural storage, not a direct universal field-stage reduction. ARC alone did not induce nodulation in the reported laboratory comparison; rhizobia were needed. One-way fungal inhibition is not reciprocal competition. The combined endpoint is not itself a colonization-facilitation interaction or demonstrated host antifungal immunity. Narrow participant scope on the separate suppression and nodulation nodes, preserve both existing outcome-contribution arrows as HYPOTHESIZED/PARTIAL, and keep the excluded-strain counter-selection repair (#300/#307) intact. No new toxin-production procedures, strain designs or causal topology.

Review Scope

Fresh primary XML and bounded main-text sections were read, not figure pixels, separate supplements or raw data. All five matching issue bodies were read. All-state title/body dedup and scoped ignored/hidden local searches found no duplicate of this finding; not every historical PR or comment was read.

Lifecycle

Address in the dependent batch107 PR; close only after protected-main merge. Self-adversarial review is not independent approval. No paid provider submission or new topology is included.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Addressed in #1842 at f1c2170; self-review: #1842 (review). 967 passed in 327.16s (0:05:27); postcommit docs-current passed. 42 gate outputs/digests, decisions, provenance and five append-only histories committed. All 13 nodes and seven qualified existing directions retained; two spatial arrows removed. All 31 reviewed quotations match fresh primary text and unchanged caches. HydDB provenance corrected with an append-only history; final gates rerun. Plain just-lint passed;explicit-runtime no-incremental mypy additionally checked. Identity #1841 remains open, spring stays needs_research. Not independent approval; close only after protected-main merge.

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