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Separate Halomonas PHB phenotype and alginate intervention from ecological typing #1857

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Description

@realmarcin

Finding

CommunityMech:000198. Retain photosynthetic sucrose support, PHB accumulation and abstract-reported persistence. PHB output is not a second pairwise cross-feeding event; alginate encapsulation is an abiotic intervention, not colonization facilitation by another organism. Qualify encapsulation-to-PHB mediation and remove the graph claim that all external organic carbon was excluded, which cannot be established from the available abstract. Preserve the two existing directions without inventing reciprocal services.

Evidence And Scope

https://pubmed.ncbi.nlm.nih.gov/29061492/
Whole three canonical records and all ten nodes/six existing arrows reviewed. Independently retrieved primary abstract for Halomonas; primary main text/captions for Shewanella, PHA, DNT and multi-omics; nitrate-study abstract and relevant coculture Results/Discussion. Exact read spans and limitations will accompany the decision ledger. No raw data or separate supplement/figure-pixel audit.

Fresh all-state issue title/body dedup and ignored/hidden-inclusive local searches performed. Read matching #1093/#258/#1851/#1669/#1606/#1605/#837/#836/#835 and related #529; no duplicate exact finding in that bounded scope. PRs/comments and all local historical reports were not exhaustively read.

Lifecycle

Address in dependent batch110; close only after protected-main merge. Self-adversarial review is not independent approval. Existing graph repairs add no topology or provider spend.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Graph repair addressed; close only after protected-main merge. #1864 at 4f41c29; exact-head self-review #1864 (review). 994 passed in 335.27s (0:05:35); postcommit docs-current passed. Decisions, 35 gate outputs/digests, four append-only histories and four mutation probes are recorded. One known snippet-audit ligature false positive is explicit (#1863); source-access and non-graph limits remain. Self-review is not independent approval.

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