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Reconcile synthetic-lichen culture metadata with experimental versus seed conditions #1868

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Description

@realmarcin

Finding

CommunityMech:000149. cultivation_setup.notes says light is given only for seed preparation, but primary Methods explicitly specify illumination and the light/dark cycle for experimental pure and mixed cultures. Conversely, growth_media assigns the seed temperature to the community without a clearly stated experimental-culture temperature. Reconcile the two metadata blocks against exact assay scope, preserving the #529 distinction rather than propagating inoculum conditions. Graph repair leaves these fields unchanged; no protocol optimization requested.

Evidence And Scope

https://pubmed.ncbi.nlm.nih.gov/28344645/
Whole three records and independently retrieved primary abstract/main bodies, Methods, embedded captions and tables were read. No separate supplements, original figure pixels or raw datasets were audited. Source-read limits and exact artifact hashes will accompany batch111.

Fresh all-state title/body dedup matched #850/#622/#1547; all bodies and related #529/#1091 were read. Local search included hidden and ignored files in its recorded scope. PR comments and all historical local reports were not exhaustively searched.

Lifecycle

Keep open beyond graph-repair merge until this distinct metadata follow-up is verified. Source-based self-adversarial review, not independent approval. No new topology, paid Edison job or experimental protocol is proposed.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Follow-up remains open; this PR documents but does not resolve it. #1870 at c38a890; exact-head self-review #1870 (review). 1003 passed in 467.34s (0:07:47); postcommit docs-current passed. Decisions, 34 gate outputs/digests, three append-only histories and four mutation probes are recorded. Source-access and non-graph limits remain. Self-review is not independent approval.

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