Skip to content

Reconcile periphyton aggregate taxonomy with introduced and detected membership #1869

Open

Description

@realmarcin

Finding

CommunityMech:000130. The record stores only three aggregate phototroph groups, while the primary study introduced 26 phototrophic species from non-axenic stocks onto Sphingomonas-conditioned chambers. Mature communities contained at least22 detected phototrophic species; three introduced species were no longer detected, and Pediastrum species were not resolved separately. Do not treat the input pool as a fully defined axenic final membership. Review Table1, repeated Cyclotella grouping, barcode data and supplements before expanding canonical taxonomy or assigning persistent Sphingomonas membership. This is non-graph curation; no new organisms or protocols are imported in the graph repair.

Evidence And Scope

https://pubmed.ncbi.nlm.nih.gov/35869094/
Whole three records and independently retrieved primary abstract/main bodies, Methods, embedded captions and tables were read. No separate supplements, original figure pixels or raw datasets were audited. Source-read limits and exact artifact hashes will accompany batch111.

Fresh all-state title/body dedup matched #850/#622/#1547; all bodies and related #529/#1091 were read. Local search included hidden and ignored files in its recorded scope. PR comments and all historical local reports were not exhaustively searched.

Lifecycle

Keep open beyond graph-repair merge until this distinct metadata follow-up is verified. Source-based self-adversarial review, not independent approval. No new topology, paid Edison job or experimental protocol is proposed.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Follow-up remains open; this PR documents but does not resolve it. #1870 at c38a890; exact-head self-review #1870 (review). 1003 passed in 467.34s (0:07:47); postcommit docs-current passed. Decisions, 34 gate outputs/digests, three append-only histories and four mutation probes are recorded. Source-access and non-graph limits remain. Self-review is not independent approval.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions