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Reconcile syntrophic-record culture metadata with vessel volume and generation time #1877

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Description

@realmarcin

Finding

Non-graph follow-up for batch112: CommunityMech:000189 cultivation_setup working_volume=250mL is the incubation-bottle capacity in Methods, not an established liquid charge (the existing notes already acknowledge this). CommunityMech:000070 growth_media incubation_time=84hours imports a generation time, not experiment duration. Recheck the rich recipe blocks in000068/000069/000070 against actual sources and keep pure-culture acceptor conditions separate from methanogenic coculture. Existing #583 covers structured omission guidance and #183 missing-source growth data, not these populated-field assertions; closed #529 records the scope hazard. Graph curation does not modify these metadata fields.

Sources And Limits

https://pubmed.ncbi.nlm.nih.gov/34603271/
https://pubmed.ncbi.nlm.nih.gov/16345745/
https://pubmed.ncbi.nlm.nih.gov/29611893/

Whole seven canonical records were read. Four fresh extracted primary main bodies were read (2018proteome,2021coordination,2022ES5,2018nanomaterials). Older articles are bounded to fresh primary abstracts; the 2024 formate paper uses existing curator-supplied text, whose main content was read. No original figure pixels, separate supplements or raw data were audited. Full access/proof records will accompany batch112.

Fresh all-state title/body dedup matched #1392/#1389/#795/#583/#496/#259; their bodies and related #529/#183 were read. Ignored/hidden files were included in the recorded local search scope; historical reports and PR comments were not exhaustively read.

Lifecycle

Remain open beyond graph-repair merge until separate metadata curation is verified. Source-based self-adversarial review, not independent approval. No new topology or paid Edison run.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Non-graph follow-up remains open. #1879 at 7a92057; self-review #1879 (review). 1014 passed in 381.37s (0:06:21); postcommit docs-current passed. Eight append-only histories, 70 gate outputs and five mutation probes recorded. Superseded failed runs are retained, not counted as passes. The unchanged #622 reference failure is explicitly excepted, not counted as a pass. Self-review is not independent approval.

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