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Complete the missing Ruegeria B12 growth-support graph after Edison authentication #1883

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Description

@realmarcin

Finding

CommunityMech:000162: 2017 primary paper Figure 1 and Results report rescue of B12-limited T. pseudonana CCMP1335 by R. pomeroyi DSS-3, with growth comparable to exogenous B12 controls. Existing chitin-transcription node must not be repurposed as this distinct reciprocal relationship. New topology requires the causal-graph skill Edison step. One-community dry run completed (query SHA256 1b2797a8920505adf873e50a02f8827e5aa23ac5e5aa8387603ef7310bb42e67); authorized real invocation stopped in load_api_key before client creation because neither configured key was available. Provider submissions=0 and spend=0. Configure authentication securely, run once, review all report sections and primary evidence, and curate only supported nodes/directions. No previous denied/unanswered scope was retried.

Sources And Limits

https://pubmed.ncbi.nlm.nih.gov/28631440/

Three whole canonical records read. Fresh primary abstracts and DOI metadata for nine source identities; complete extracted main bodies for the 2014 climate, HP15 genome and 2020 partitioning papers; full extracted 2011 aggregation, 2017 recognition and 2017 consortium PDFs. Selected figures visually inspected. The 2018 diel main body was read from existing curator text, not independently retrieved full text. Chemotaxis is bounded to the abstract; MEPS full PDF returned HTTP 401 and was not bypassed. No new publication bodies or cache changes.

All-state issue title/body dedup and ignored/hidden-inclusive local searches were recorded. Nine matching existing issues were read; historical PR comments were not exhaustively searched.

Lifecycle

Remain open until the separate research or metadata work is verified. Source-based self-adversarial review is not independent approval.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Research or non-graph follow-up remains open. #1887 at 553707b; self-review #1887 (review). 1024 passed in 306.57s (0:05:06); postcommit docs-current passed. Three append-only histories, 34 validation outputs and five mutation probes recorded. Ruegeria B12 extension #1883 remains incomplete: configured Edison key unavailable, no submission or spend. Self-review is not independent approval.

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