Skip to content

Distinguish proposed hydrogen syntrophy from observed Tropidoatractus magnetotaxis #1908

Description

@realmarcin

Finding

CommunityMech:000337: qualify inferred hydrogen transfer and host energetic benefit in names, evidence and arrows. Expressed pathways support the metabolic hypothesis but are not hydrogen-flux or fitness measurements. Preserve physical magnetotaxis evidence and inferred bacterial magnetosome attribution with failed-FISH limits. Leave the optional interaction_type unset for capability provision rather than forcing MUTUALISM; this follows existing issue #749 and does not require an enum change.

Sources And Limits

https://pmc.ncbi.nlm.nih.gov/articles/PMC13416559/

Whole canonical records and graph snippets read; fresh primary identity/abstract checks for all four. Tropidoatractus and Variovorax main-body XML including methods, results, discussion and captions read; no original figure-pixel, supplementary-file or raw-data audit. Tribromophenol and urine repairs are final-publication abstract-bounded. Published urine full text is institutional-access restricted; a public earlier thesis chapter was identified but not read or substituted for the final publication. No access bypass, new full-body cache import or exhaustive literature search claim.

Fresh all-state issue title/body dedup found no exact-system match; broader enum issue #749 was separately read and is not duplicated. Local hidden/ignored-inclusive path search excludes .git, docs, site, reference caches and .env; not a historical PR-comment audit.

Lifecycle

Address in batch117; close only after protected-main merge. Self-adversarial review is not independent approval.

Activity

  1. realmarcin commented on Oct 8, 2026

    @realmarcin
    ContributorAuthor

    Graph repair addressed; close only after protected-main merge. #1914 at e3ad14c; self-review #1914 (review). 1068 passed in 440.71s (0:07:20); postcommit docs-current passed. Four append-only histories, 41 validation outputs and ten mutation probes recorded. No new topology or Edison invocation in this batch; prior research extensions remain incomplete. Self-review is not independent approval.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions